jbwa | Java Bindings for bwa

by lindenb Java Version: 1.0.0 License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | jbwa Summary

jbwa is a Java library. jbwa has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However jbwa build file is not available. You can download it from GitHub, Maven.

Java Bindings (JNI) for bwa. Author: Pierre Lindenbaum PhD. @yokofakun (Institut du Thorax, Nantes, France) BWA is written by Heng Li (Broad Institute).

Support

Quality

Security

License

Reuse

Support

jbwa has a low active ecosystem.

It has 19 star(s) with 12 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 3 have been closed. On average issues are closed in 9 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of jbwa is 1.0.0

Quality

jbwa has 0 bugs and 0 code smells.

Security

jbwa has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

jbwa code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

jbwa is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

jbwa releases are available to install and integrate.

Deployable package is available in Maven.

jbwa has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

jbwa saves you 340 person hours of effort in developing the same functionality from scratch.

It has 815 lines of code, 79 functions and 13 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed jbwa and discovered the below as its top functions. This is intended to give you an instant insight into jbwa implemented functionality, and help decide if they suit your requirements.

Main method for testing
Gets the value of the chrom property
Gets the cigar value
Align the alignment between two sequences
Join a DNA sequence with the specified name
Set the mqual parameter
Set the signature for the item
Set the chrom
Main method
Sets the BWAS service options
Main entry point for bwa
Updates the scoring parameters
Disposes the container
Close the menu item
Finalize resources
Test program
Returns a string representation of this record
Entry point to bwj
Display the menu alignments
Main method to run the fasta library
Returns the name of the reference file

Get all kandi verified functions for this library.

jbwa Key Features

No Key Features are available at this moment for jbwa.

jbwa Examples and Code Snippets

No Code Snippets are available at this moment for jbwa.

Community Discussions

No Community Discussions are available at this moment for jbwa.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install jbwa

You can download it from GitHub, Maven.
You can use jbwa like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the jbwa component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .