systemsgenetics | Generic Java genotype reader / writer , QTL mapping software

by molgenis Java Version: GH_1.4.27 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | systemsgenetics Summary

systemsgenetics is a Java library. systemsgenetics has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

[Build Status] Systems Genetics.

Support

Quality

Security

License

Reuse

Support

systemsgenetics has a low active ecosystem.

It has 156 star(s) with 96 fork(s). There are 47 watchers for this library.

It had no major release in the last 12 months.

There are 37 open issues and 48 have been closed. On average issues are closed in 119 days. There are 18 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of systemsgenetics is GH_1.4.27

Quality

systemsgenetics has 0 bugs and 0 code smells.

Security

systemsgenetics has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

systemsgenetics code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

systemsgenetics is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

systemsgenetics releases are available to install and integrate.

Build file is available. You can build the component from source.

systemsgenetics saves you 158831 person hours of effort in developing the same functionality from scratch.

It has 168505 lines of code, 8211 functions and 1135 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed systemsgenetics and discovered the below as its top functions. This is intended to give you an instant insight into systemsgenetics implemented functionality, and help decide if they suit your requirements.

Test program entry point
Determines the w - co -coamWhitney algorithm
Returns the normal value of the z - coordinate
Gets the original raw data
Analyze the transptic analysis
Get eigen vector
Run the gene
Computes the intrinsic parameters
Loads the expression from a text file
Sets the variance and mean values for the probes
Initializes the line
This is a helper function to get the output of the zschedrices
Plots the chromosomes in the genome
Prepares the EQTLMapping file for a given gene expression
Draw the histogram range
Run the SNP analysis
Performs the SNTP analysis
Performs trie coding conversion
Draw the data
Run the benchmark
Run the test
Runs the triagotype converter
Run the statistics per GWAS 2
Main entry point
Demonstrates how to generate an interaction plot
Computes the overlap and Z score of the two eQ files

Get all kandi verified functions for this library.

systemsgenetics Key Features

No Key Features are available at this moment for systemsgenetics.

systemsgenetics Examples and Code Snippets

No Code Snippets are available at this moment for systemsgenetics.

Community Discussions

No Community Discussions are available at this moment for systemsgenetics.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install systemsgenetics

You can download it from GitHub.
You can use systemsgenetics like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the systemsgenetics component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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