isomap | Isometric Tile Map Model & Viewer
kandi X-RAY | isomap Summary
kandi X-RAY | isomap Summary
Isometric Tile Map Model & Viewer.
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Top functions reviewed by kandi - BETA
- Read a tileset from an input stream .
- Reads a hex image .
- Determines the bounds of the tile in the specified region
- Load the terrain data from a stream .
- Returns the tile at the specified world coordinate .
- Compare two triples
- Generate random index for the map .
- Zoom to the world
- Checks if overlay pattern is ok
- Opens a stream for writing to a single file .
isomap Key Features
isomap Examples and Code Snippets
Community Discussions
Trending Discussions on isomap
QUESTION
I am using the isomap-function from vegan package in R to analyse community data of epiphytic mosses and lichens. I started analysing the data using NMDS but due to the structure of the data ran into problems which is why I switched to ISOMAP which works perfectly well and returns very nice results. So far so good... However, the output of the function does not support plotting of species within the ISOMAP plot as species scores are not available. Anyway, I would really like to add species information to enhance the interpretability of the output.
Does anyone of you has a solution or hint to this problem? Is there a way to add species kind of post hoc to the plot as it can be done with environmental data?
I would greatly appreciate any help on this topic!
Thank you and best regards, Inga
...ANSWER
Answered 2022-Mar-06 at 20:22No, there is no function to add species scores to isomap
. It would look like this:
QUESTION
I am currently trying to understand how Isomap results will differ from PCA and MDS and if they are more suited for my data. For this I started to work with the isomap function provided by vegan in R using the BCI dataset and their basic example https://www.rdocumentation.org/packages/vegan/versions/2.4-2/topics/isomap (code below). Several publications compare the residual variance as a good measure (e.g. the "original paper by Tenenbaum from 2002, pg. 2321) https://web.mit.edu/cocosci/Papers/sci_reprint.pdf However, so far I have failed to extract this information from the object "ord" in the example. There is this element ord[["eig"]], probably connected to it, but so far I am confused. Help would be much appreciated!
...ANSWER
Answered 2020-Jun-16 at 14:59So I did some further investigation on this topic.
Essentially there will be as many Eigenvalues in the dataset as variables. The Eigenvals will be covered in the new components or dimensions according to their explanatory power, the first component or dimension will usually explain most i.e. have the largest Eigenvalue. Eigenvalues of 1 explain just one variable, which is pretty boring. Mathematically, Eigenvalues are the sum of squared factor loadings.
For Isomap from the example above ,this can be as follows:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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No vulnerabilities reported
Install isomap
You can use isomap like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the isomap component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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