MtbImporter | Fully automated data import tool for cBioPortal ( https | Data Manipulation library

by nr23730 Java Version: Current License: AGPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | MtbImporter Summary

MtbImporter is a Java library typically used in Utilities, Data Manipulation applications. MtbImporter has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

MtbImporter is a tool that eases the data integration, management and import of both clinical and mutational data into cBioPortal. It is tested and optimized to work with the core components of the MIRACUM UseCase 3 Support for Molecular Tumor Boards, which are available here:. To account for the huge variety of clinical source systems, this tool relies on csv files as input format and uses Metadata Repositories to store data model descriptions and their relations in a source code independent way. If you want to consume FHIR resources, you will need to flatten them first to a csv based format using tools like FhirExtinguisher or fhircrackr.

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Quality

Security

License

Reuse

Support

MtbImporter has a low active ecosystem.

It has 3 star(s) with 0 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 0 have been closed. There are 10 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of MtbImporter is current.

Quality

MtbImporter has no bugs reported.

Security

MtbImporter has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

MtbImporter is licensed under the AGPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

MtbImporter releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

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MtbImporter Key Features

No Key Features are available at this moment for MtbImporter.

MtbImporter Examples and Code Snippets

No Code Snippets are available at this moment for MtbImporter.

Community Discussions

Trending Discussions on Data Manipulation

R: Is there a "Un-Character" Command in R?

Creating new columns based on data in row separated by specific character in R

Multiplying and Adding Values across Rows

How to make a rank column in R

How to return the column title wherein the row contains the greatest value in Pandas Dataframe

Split large csv file into multiple files based on column(s)

Get the first non-null value from selected cells in a row

pivot_longer with column pairs

Simulating Random Draws From a "Hat"

Break Apart a String into Separate Columns R

QUESTION

R: Is there a "Un-Character" Command in R?

Asked 2022-Apr-10 at 17:37

I am working with the R programming language.

I have the following dataset:

...

ANSWER

Answered 2022-Apr-10 at 05:36

Up front, "1,3,4" != 1. It seems you should look to split the strings using strsplit(., ",").

Source https://stackoverflow.com/questions/71813866

QUESTION

Creating new columns based on data in row separated by specific character in R

Asked 2022-Mar-15 at 08:48

I've the following table

Owner Pet Housing_Type A Cats;Dog;Rabbit 3 B Dog;Rabbit 2 C Cats 2 D Cats;Rabbit 3 E Cats;Fish 1

The code is as follows:

...

ANSWER

Answered 2022-Mar-15 at 08:48

One approach is to define a helper function that matches for a specific animal, then bind the columns to the original frame.

Note that some wrangling is done to get rid of whitespace to identify the unique animals to query.

Source https://stackoverflow.com/questions/71478316

QUESTION

Multiplying and Adding Values across Rows

Asked 2022-Mar-10 at 08:24

I have this data frame:

...

ANSWER

Answered 2022-Mar-10 at 04:12

We can use stri_replace_all_regex to replace your color_1 into integers together with the arithmetic operator.

Here I've stored your values into a vector color_1_convert. We can use this as the input in stri_replace_all_regex for better management of the values.

Source https://stackoverflow.com/questions/71418533

QUESTION

How to make a rank column in R

Asked 2022-Mar-07 at 16:19

I have a database with columns M1, M2 and M3. These M values correspond to the values obtained by each method. My idea is now to make a rank column for each of them. For M1 and M2, the rank will be from the highest value to the lowest value and M3 in reverse. I made the output table for you to see.

...

ANSWER

Answered 2022-Mar-07 at 14:15

Using rank and relocate:

Source https://stackoverflow.com/questions/71381995

QUESTION

How to return the column title wherein the row contains the greatest value in Pandas Dataframe

Asked 2022-Feb-24 at 20:56

I working on a Python project that has a DataFrame like this:

...

ANSWER

Answered 2022-Feb-24 at 20:48

You could use the idxmax method on axis:

Source https://stackoverflow.com/questions/71258033

QUESTION

Split large csv file into multiple files based on column(s)

Asked 2022-Feb-07 at 12:49

I would like to know of a fast/efficient way in any program (awk/perl/python) to split a csv file (say 10k columns) into multiple small files each containing 2 columns. I would be doing this on a unix machine.

...

ANSWER

Answered 2021-Dec-12 at 05:22

With your show samples, attempts; please try following awk code. Since you are opening files all together it may fail with infamous "too many files opened error" So to avoid that have all values into an array and in END block of this awk code print them one by one and I am closing them ASAP all contents are getting printed to output file.

Source https://stackoverflow.com/questions/70320648

QUESTION

Get the first non-null value from selected cells in a row

Asked 2022-Feb-04 at 09:55

Good afternoon, friends!

I'm currently performing some calculations in R (df is displayed below). My goal is to display in a new column the first non-null value from selected cells for each row.

My df is:

...

ANSWER

Answered 2022-Feb-03 at 11:16

One option with dplyr could be:

Source https://stackoverflow.com/questions/70970158

QUESTION

pivot_longer with column pairs

Asked 2022-Feb-03 at 14:02

I am again struggling with transforming a wide df into a long one using pivot_longer The data frame is a result of power analysis for different effect sizes and sample sizes, this is how the original df looks like:

...

ANSWER

Answered 2022-Feb-03 at 10:59

library(tidyverse)

example %>% 
  pivot_longer(cols = starts_with("es"), names_to = "type", names_prefix = "es_", values_to = "es") %>%
  pivot_longer(cols = starts_with("pwr"), names_to = "pwr", names_prefix = "pwr_") %>% 
  filter(substr(type, 1, 3) == substr(pwr, 1, 3)) %>% 
  mutate(pwr = parse_number(pwr)) %>% 
  arrange(pwr, es, type)

Source https://stackoverflow.com/questions/70969176

QUESTION

Simulating Random Draws From a "Hat"

Asked 2021-Dec-28 at 21:50

Suppose I have the following 10 variables (num_var_1, num_var_2, num_var_3, num_var_4, num_var_5, factor_var_1, factor_var_2, factor_var_3, factor_var_4, factor_var_5):

...

ANSWER

Answered 2021-Dec-26 at 10:11

You may define a function FUN(n) that creates a data set as shown in OP.

Source https://stackoverflow.com/questions/70483731

QUESTION

Break Apart a String into Separate Columns R

Asked 2021-Dec-17 at 20:39

I am trying to tidy up some data that is all contained in 1 column called "game_info" as a string. This data contains college basketball upcoming game data, with the Date, Time, Team IDs, Team Names, etc. Ideally each one of those would be their own column. I have tried separating with a space delimiter, but that has not worked well since there are teams such as "Duke" with 1 part to their name, and teams with 2 to 3 parts to their name (Michigan State, South Dakota State, etc). There also teams with "-" dashes in their name.

Here is my data:

...

ANSWER

Answered 2021-Dec-16 at 15:25

Here's one with regex. See regex101 link for the regex explanations

Source https://stackoverflow.com/questions/70381064

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install MtbImporter

You can download it from GitHub.
You can use MtbImporter like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the MtbImporter component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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