openmicroscopy | Open Microscopy Environment

by ome Java Version: v5.6.3 License: GPL-2.0

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | openmicroscopy Summary

openmicroscopy is a Java library. openmicroscopy has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However openmicroscopy build file is not available. You can download it from GitHub.

Also see CONTRIBUTING.md and SUPPORT.md. Full developer documentation for OMERO is available from For general guidance on contributing to OME projects, see If you are looking for something else, please refer to the main OME website

Support

Quality

Security

License

Reuse

Support

openmicroscopy has a low active ecosystem.

It has 149 star(s) with 95 fork(s). There are 24 watchers for this library.

It had no major release in the last 12 months.

There are 21 open issues and 54 have been closed. On average issues are closed in 67 days. There are 14 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of openmicroscopy is v5.6.3

Quality

openmicroscopy has no bugs reported.

Security

openmicroscopy has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

openmicroscopy is licensed under the GPL-2.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

openmicroscopy releases are available to install and integrate.

openmicroscopy has no build file. You will be need to create the build yourself to build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed openmicroscopy and discovered the below as its top functions. This is intended to give you an instant insight into openmicroscopy implemented functionality, and help decide if they suit your requirements.

Create ROIs .
create a Roi instance
Execute the build .
Creates a new image .
Creates the file annotation and link to the image file .
Load projects and images .
Load the datasets for the user
Creates the table and link to the image .
Start Ant .
Creates the rendering engine .

Get all kandi verified functions for this library.

openmicroscopy Key Features

No Key Features are available at this moment for openmicroscopy.

openmicroscopy Examples and Code Snippets

No Code Snippets are available at this moment for openmicroscopy.

Community Discussions

Trending Discussions on openmicroscopy

Spring Security LDAP: Bind vs. Authenticate against Active Directory in ApacheDS

Dockerfile LDAP updates not saved

Adding .jar files to Matlab

QUESTION

Spring Security LDAP: Bind vs. Authenticate against Active Directory in ApacheDS

Asked 2019-Jun-18 at 15:06

What works

I developed this against our company's AD:

...

ANSWER

Answered 2019-Jun-18 at 15:06

LDAP based simple BIND operation always requires the distinguished name (DN) of the entry and password. Only AD allows to perform the BIND operation with samAccountName. AD is somewhat special.

Source https://stackoverflow.com/questions/56643251

QUESTION

Dockerfile LDAP updates not saved

Asked 2018-Oct-10 at 07:38

I'm trying to create docker image extended from a base image with some tweaks. Adding files works fine, running commands however doesn't save. I've been looking at the Dockerfile of the image I'm extending but I'm none the wiser.

My Dockerfile:

...

ANSWER

Answered 2018-Oct-10 at 07:38

This wont work, while building the image, the Server is not started. You could create bash script startet when the container is started, where you run the import.

Source https://stackoverflow.com/questions/52734408

QUESTION

Adding .jar files to Matlab

Asked 2018-Jul-30 at 00:22

Bio-Formats is a pretty common toolbox used in MATLAB, and I want to use it to directly work with .nd2 files. As the website instructs (https://docs.openmicroscopy.org/bio-formats/5.8.2/users/matlab/index.html), I downloaded and unzipped the folder. I then added the .m files to my Matlab path, including the .jar file 'bioformats_package.jar'. However, I can't use any of the functions due to this error:

...

ANSWER

Answered 2018-Jul-30 at 00:22

I think you just need download bfmatlab.zip and extract it, then move \bfmatlab\bfmatlab to your current MATLAB path, or add the bfmatlab folder itself to MATALB path. In your case, moving all files under \bfmatlab\bfmatlab to '\Users\user_name\Documents\MATLAB\Image Analysis' will work fine.

When bfopen is called, internal bfCheckJavaPath function will add bioformats_package.jar to MATLAB's dynamic Java path, so you don't need to add this jar to Java path by yourself.

Source https://stackoverflow.com/questions/51583922

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install openmicroscopy

You can download it from GitHub.
You can use openmicroscopy like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the openmicroscopy component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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