ontology | Collection of official ontologies of universAAL

Could you please tell me, is it possible to implement such case by just OWL ontology definitions? Or I need to create custom rules for it?

I tried to save my ontology as NTriples format using owlapi. This error appear when I try to save my ontology:

Update [2021-05-27: 8d later] I solved this myself -- see the accepted answer. I edited my original question below for brevity, removing portions that are no longer relevant to the issue/solution.

A copy of the original, problematic code (HTML file, which at that time contained the application-specific d3.js code embedded within that file) can be found here.

https://gist.githubusercontent.com/victoriastuart/83f1de548ff2de4dda60ccbd0da937aa/raw/38a343e11bead986f0acb38fcb33f64c730bc103/ontology-d3jsv6.html

In that code, I used functions to load the JSON data and search and retrieve nodes.

• function myOntology(node) { d3.json(ontology.json").then(function(treeData) {...}}

• function findNode(node) { myOntology(node); }

• function getNode(node) {...}

The solution simplifies that process, no longer relying on those functions.

Original question (paraphrased)

I am encountering an issue regarding the programmatic access of data loaded into a d3.js v6 collapsible tree via a promise.

The main issue is that once I load the JSON data into the d3 visualization, after the first access I can not re-acess those data.

That is, I appear to be "stuck" in the initial data load (which I interpret as being due to the promise/ callbacks not exiting - and/or other unidentified coding issues).

not working:

I am using Protege to explore the SSN ontology,
but a lot of classes like the survivalRange seem to be missing from the main file.

How could I import all the classes and entities of the ssn-system,
without importing them manually one by one by the IRI?

I am reading an XML/OWL file (generated from Protege) in Jupyter notebook.

I can read the root element, but for children its showing error/blank.

I am trying to programmatically open d3.js nodes in a collapsible tree:

I load the data with the following d3.js snippet (which collapses the nodes after the second level),

I tried to do Enrichment Analysis of Arabidopsis thaliana by using enrichGO with R. But the result is empty. What caused this result?

I am running an Apache Jena Fuseki server als the SPARQL endpoint that I can connect to when using the application normally. Everything works and I get the output from the resulting query.

But When I try to run my test with Springboot, Junit5 (I assume) and MockMVC it always get stuck on the following part:

How can I reproduce the way Protege load ontology using owlapi in java? Like when I use: