molecular | make http request simply in the browser or with a NodeJs | REST library

by ArthurMialon JavaScript Version: Current License: MIT

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kandi X-RAY | molecular Summary

molecular is a JavaScript library typically used in Web Services, REST, Nodejs, Express.js applications. molecular has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can install using 'npm i molecularjs' or download it from GitHub, npm.

Micro-library to make http request simply in the browser or with a NodeJs server.

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molecular has a low active ecosystem.

It has 9 star(s) with 0 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

molecular has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of molecular is current.

Quality

molecular has no bugs reported.

Security

molecular has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

molecular is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

molecular releases are not available. You will need to build from source code and install.

Deployable package is available in npm.

Installation instructions are not available. Examples and code snippets are available.

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molecular Key Features

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molecular Examples and Code Snippets

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Community Discussions

Trending Discussions on molecular

How to make sklearn.TfidfVectorizer tokenize special phrases?

InnerText returns empty for a specific td class

Optimize performance on a SLURM cluster

Find Matching Strings within a Table with Hidden Values

Can't convert molecule to fingerprint with rdkit

How to have BeautifulSoup's select method a list from searching find two selectors

How to visualize clusters overlaying a circle plot in R?

How to solve error 6011 when cheking for-loop condition?

How to fix image saving that's cutting off y-axis text in R?

Dynamically extract string in excel

QUESTION

How to make sklearn.TfidfVectorizer tokenize special phrases?

Asked 2021-May-20 at 21:52

I am trying to create a tf-idf table using TfidfVectorizer from sklearn package in python. For example I have a corpus of one string "PD-L1 expression positive (≥1%–49%) and negative for actionable molecular markers"

TfidfVectorizer has an token_pattern argument that indicates how the token should be like. The default is token_pattern = token_pattern='(?u)\b\w\w+\b', it will split all the words by space and remove the numbers and special characters to create the tokens, and generates some tokens like below

["pd", "expression", "positive","and" ,"negative" ,"for" ,"actionable" ,"molecular" ",markers"]

But something I would like to have is:

["pd-l1", "expression", "positive", "≥1%–49%","and" ,"negative" ,"for" ,"actionable" "molecular" ,"markers"]

I was tweaking token_pattern argument for hours but cannot get it right. Alternatively, Is there here a way to tell explicitly to the vectorizer that I want to havepd-l1 and >1%-49% as token without going too wild on regrex? Any help is very appreciated!

...

ANSWER

Answered 2021-May-20 at 21:52

I get it using pattern '[^ ()]+' - all chars except space, (, )

It may need to add punctuations to this list.

Source https://stackoverflow.com/questions/67627806

QUESTION

InnerText returns empty for a specific td class

Asked 2021-May-08 at 01:40

I am trying to retrieve Molecular Weight value "448.39" from this website

using the following VBA

...

ANSWER

Answered 2021-May-07 at 15:49

The information you want is in JSON format in a

Source https://stackoverflow.com/questions/67437382

QUESTION

Optimize performance on a SLURM cluster

Asked 2021-Apr-30 at 14:53

I am writing you after many attempts I have done on a CPU cluster so structured:

144 standard compute nodes 2× AMD EPYC 7742, 2× 64 cores, 2.25 GHz 256 (16× 16) GB DDR4, 3200 MHz InfiniBand HDR100 (Connect-X6) local disk for operating system (1× 240 GB SSD) 1 TB NVMe

Now, since my core-h are here limited, I want to maximize performance as much as I can. I am doing some benchmarking with the following submission script:

...

ANSWER

Answered 2021-Apr-30 at 14:53

In your case, the 256 tasks have no constraints to run in the same rack, location or not. Slurm have no clues to schedule correctly the job on your cluster. It could be schedule 1 task on 256 different nodes, and that is not efficient at all.

To be sure that all is schedule correctly, perhaps you should force to locate the tasks on the node.

Source https://stackoverflow.com/questions/67252250

QUESTION

Find Matching Strings within a Table with Hidden Values

Asked 2021-Apr-29 at 18:32

Sample table below (only 1 column):

...

ANSWER

Answered 2021-Apr-29 at 18:32

The ListObject doesn't have FoundCell property. Also XlLookAt enumeration may be xlPart or xlWhole, not xlCellTypeVisible (https://docs.microsoft.com/ru-ru/office/vba/api/excel.xllookat). So errors are raising but On Error Resume Next suppresses them. This causes the Foundx variables to remain Nothing.

Try next code:

Source https://stackoverflow.com/questions/67321397

QUESTION

Can't convert molecule to fingerprint with rdkit

Asked 2021-Apr-29 at 16:05

I'm trying to convert molecular smiles into fingerprints using rdkit. I have two smiles: Nc1cccc(N)n1 and Nc1cc(CSc2ccc(O)cc2)cc(N)n1. The first one was expanded into the second one. In other words, the second molecule contains the first one in its structure.

What I did was use rdkit to remove the common part to obtain smiles of a fragment that differs (CSC1=CC=C(O)C=C1 in kekulized form). I'm trying to convert that fragment into a molecule and then to a fingerprint to calculate similarity with a reference molecule.

Desired transformation

But I get an error: 'Can't kekulize atoms' with indices of those atoms. This is strange to me because all the smiles (the two input smiles and the resulting fragment smiles) can be easily visualized using MarvinSketch or Chemdraw (software for drawing molecules). I even had Marvin kekulize the fragment smiles and tried making a molecule from that but I still get the same error. Here is my code for removing the fragment:

...

ANSWER

Answered 2021-Apr-29 at 16:05

With fragment_smiles = 'Nc1cccc(N)n1' and a list like smiles = ['Nc1cc(CSc2ccc(O)cc2)cc(N)n1', 'Nc1cc(COc2ccc(O)cc2)cc(N)n1']. I have no problem getting a fingerprint.

It looks as if, after deleting the substructure, there are some smiles_frags that are not correct SMILES.

To prove wich SMILES in the list gives the problem you can use

Source https://stackoverflow.com/questions/67302261

QUESTION

How to have BeautifulSoup's select method a list from searching find two selectors

Asked 2021-Apr-22 at 00:15

def getPage(url):
    try:
        req = requests.get(url)
    except requests.exceptions.RequestException:
        return None
    return BeautifulSoup(req.text, 'html.parser')

bs = getPage('https://www.oreilly.com/pub/e/3094')
bs.select('#contained div')

...

ANSWER

Answered 2021-Apr-22 at 00:15

BeautifulSoup.select() works with the usual CSS selectors. So the following should give you all of the

and

elements:

Source https://stackoverflow.com/questions/67204573

QUESTION

How to visualize clusters overlaying a circle plot in R?

Asked 2021-Mar-31 at 20:59

I have a plot I make using a website called Revigo that provides an R script (included below) to create a plot like this:

I'm looking to see if it's possible to perform and visualize a clustering on top of these points in the same graph? Since this plot looks like one big circle I'm trying to see if there are any smaller groupings within it that I can highlight. I have a biology background so I'm not sure where to start with trying to get this visualization in the same plot. I have explored using hclust() but I don't know the steps to bring clusters to be shown on top of this graph.

The code and data that gives the plot above is:

...

ANSWER

Answered 2021-Mar-27 at 23:16

A way to group them is using different shape.

Source https://stackoverflow.com/questions/66805929

QUESTION

How to solve error 6011 when cheking for-loop condition?

Asked 2021-Mar-29 at 19:03

I am new in C and tried checking the loop condition as to find on the internet, but I get this error I am not able to solve (no other questions/answers were helpful):

...

ANSWER

Answered 2021-Mar-29 at 19:03

Error C6011 is a warning, not an error, so your code will run, but it's not bad to handle these issues if Visual Studio is indicating them.

To get the warning to go away, fix your loop like so:

Source https://stackoverflow.com/questions/66856161

QUESTION

How to fix image saving that's cutting off y-axis text in R?

Asked 2021-Mar-26 at 18:20

I have a heatmap where the text for the y-axis keeps getting cut off. The text gets cut off whether I try to save the image manually in RStudio export, or using:

...

ANSWER

Answered 2021-Mar-26 at 18:20

See my comment above: I think you are talking about the truncated row labels when you say "text for the y-axis". If that is indeed the issue you are struggling with, then increasing the Heatmap parameter row_names_max_width from the default unit(6, "cm") to something like row_names_max_width = unit(12, "cm") should allow you to accommodate longer row labels.

Source https://stackoverflow.com/questions/66763776

QUESTION

Dynamically extract string in excel

Asked 2021-Mar-26 at 01:03

I have a column called 'cArticle' in excel, containing data in below format. I have a requirement to extract in another column the code that is in brackets. Ex- Z1A,F5C,etc

cArticle Molecular Dispersion (Z1A) Acrona Perse (F5C) Leco Spers (HLP) Cullar Dipters (LPP)

I have managed to get it partially working by using the below formula, but it still returns with values with the closing brackets. How can I modify it to get the desired results?

RIGHT(cArticle,4)

Thank you in advance!

...

ANSWER

Answered 2021-Mar-25 at 22:18

If your code is always at the farthest right and is only 3 characters long, you can use formula as below

Source https://stackoverflow.com/questions/66806110

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install molecular

You can install using 'npm i molecularjs' or download it from GitHub, npm.

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