minion | Server wrapper that turns command line tools | Runtime Evironment library

 by   iobio JavaScript Version: v1.1.0 License: MIT

kandi X-RAY | minion Summary

kandi X-RAY | minion Summary

minion is a JavaScript library typically used in Server, Runtime Evironment, Nodejs applications. minion has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Minion is the server side code that powers all iobio web services. It wraps a command line program and hooks the input files/streams and stdout streams to websocket streams, enabling multiple web services to be piped together. It also handles converting the URL into a command and error handling. If you are wanting run a particular iobio webservice see the minion-services repo.
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              minion has a low active ecosystem.
              It has 56 star(s) with 7 fork(s). There are 15 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 12 have been closed. On average issues are closed in 145 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of minion is v1.1.0

            kandi-Quality Quality

              minion has no bugs reported.

            kandi-Security Security

              minion has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              minion is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              minion releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

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            minion Key Features

            No Key Features are available at this moment for minion.

            minion Examples and Code Snippets

            No Code Snippets are available at this moment for minion.

            Community Discussions

            QUESTION

            snakemake - replacing command line parameters with wildcards by cluster profile
            Asked 2021-Jun-10 at 07:54

            I am writing a snakemake pipeline to eventually identify corona virus variants.

            Below is a minimal example with three steps:

            ...

            ANSWER

            Answered 2021-Jun-10 at 07:54

            I think the problem is that rule catFasta doesn't contain the wildcard barcode. If you think about it, what job name would you expect in {wildcards.barcode}.{rule}.{jobid}?

            Maybe a solution could be to add to each rule a jobname parameter that could be {barcode} for guppyplex and minion and 'all_barcodes' for catFasta. Then use --jobname "{params.jobname}.{rule}.{jobid}"

            Source https://stackoverflow.com/questions/67906871

            QUESTION

            snakemake - define input for aggregate rule without wildcards
            Asked 2021-Jun-08 at 15:40

            I am writing a snakemake to produce Sars-Cov-2 variants from Nanopore sequencing. The pipeline that I am writing is based on the artic network, so I am using artic guppyplex and artic minion.

            The snakemake that I wrote has the following steps:

            1. zip all the fastq files for all barcodes (rule zipFq)
            2. perform read filtering with guppyplex (rule guppyplex)
            3. call the artic minion pipeline (rule minion)
            4. move the stderr and stdout from qsub to a folder under the working directory (rule mvQsubLogs)

            Below is the snakemake that I wrote so far, which works

            ...

            ANSWER

            Answered 2021-Jun-08 at 15:40

            The rule that fails is rule guppyplex, which looks for an input in the form of {FASTQ_PATH}/{{barcode}}.

            Looks like the wildcard {barcode} is filled with barcode49/barcode49.consensus.fasta, which happened because of two reasons I think:

            First (and most important): The workflow does not find a better way to produce the final output. In rule catFasta, you give an input file which is never described as an output in your workflow. The rule minion has the directory as an output, but not the file, and it is not perfectly clear for the workflow where to produce this input file.

            It therefore infers that the {barcode} wildcard somehow has to contain this .consensus.fasta that it has never seen before. This wildcard is then handed over to the top, where the workflow crashes since it cannot find a matching input file.

            Second: This initialisation of the wildcard with sth. you don't want is only possible since you did not constrain the wildcard properly. You can for example forbid the wildcard to contain a . (see wildcard_constraints here)

            However, the main problem is that catFasta does not find the desired input. I'd suggest changing the output of minion to "nanopolish/{barcode}/{barcode}.consensus.fasta", since the you already take the OUTDIR from the params, that should not hurt your rule here.

            Edit: Dummy test example:

            Source https://stackoverflow.com/questions/67805295

            QUESTION

            JavaScript calculator just returns "NaN"
            Asked 2021-May-08 at 14:49

            I'm making a calculator for a game I play and whenever I run it, it just returns "NaN" for two values, only one of the values actually returns as it should. The two values that return NaN are the ones that run through switch statements and I found that the values you get from the switch statements are undefined so I think that's where it goes wrong. I tried looking for other questions like this on StackOverflow and I found some but their answers didn't work for me.

            ...

            ANSWER

            Answered 2021-May-08 at 14:49

            The main problem is to use strings from input. The further effect is to get no values from the switch statements, because the value is a string and in all cases, you have numbers. The comparison is here strict, like ===.

            For unknown values, you could return the function and omit calculation with not given values.

            Source https://stackoverflow.com/questions/67448672

            QUESTION

            how to make entry widget in python tkinter give me the text inside it on pressing enter key
            Asked 2021-Apr-22 at 20:10

            So, lately, I was making this game on python Tkinter where the computer gives me a random word and I have to type out the words and letters I see in the word give to me, so the problem here is that, "ans" is an entry widget and I want it to work like once I am done typing the word or letter I see in the given word I should press the enter key and when I press the enter key the computer should see whatever is written inside the widget and take it inside a variable so that I can type that variable as the text of the label present on the right side (a1-a18) of the screen, and on pressing enter it should do all that and also delete everything that was previously written inside the entry widget

            ...

            ANSWER

            Answered 2021-Apr-22 at 19:52

            To bind the return/enter key, use entry.bind("", func):

            Source https://stackoverflow.com/questions/67219436

            QUESTION

            How to declare an array of objects typescript
            Asked 2021-Apr-13 at 10:40

            I apologise is the title isn't correctly worded, I'm fairly new to Programming.

            I have an object, for this example lets say its the following

            ...

            ANSWER

            Answered 2021-Apr-13 at 10:40

            As pointed out by @VLAZ interfaces cannot be instantiated, they just prescribe a "shape" for a class implementing them. So in your example DefinedPeople.CategoryA[0].name doesn't make sense, because you cannot access the property CategoryA on an interface (which is not an object).

            For the same reason you can't use your Person interface to initialise an instance variable like you're trying to do in DefinedPeople.

            In order to get what you want, your DefinedPeople interface should look like this:

            Source https://stackoverflow.com/questions/67072431

            QUESTION

            React functions not happening in order
            Asked 2021-Apr-03 at 03:04

            The problem I'm having is that this set of code NEEDS to happen in order. It is all packaged inside a component that is updating every second.

            Here is what I want to happen when the component mounts:

            Step 1: On load, retrieve the last known timestamp stored in local storage and subtract it by new Date() /1000 then console log the answer.

            Step 2: retrieve all data from local storage and update state (this includes the timestamp), continuing this process every second.

            As it stands in my code, step 2 is happening first.

            Here's a video of the app I'm working with and the component that's updating every second to provide context to my issue. I highlight my console log being 0. This is the issue I want to fix. I need the console log to not give me 0, but the current timestamp - the previous timestamp. This is so if a user using my app goes offline and comes back, it counts the time they were gone.: https://www.youtube.com/watch?v=N0tOZhHfio4

            Here's my current code:

            ...

            ANSWER

            Answered 2021-Apr-03 at 00:42

            A few things. I don't know exactly what you are doing, but you have to know that Javascript is an asynchronous programming language. That means that stuff doesn't happen in order. If a function takes time, Javascript will go onto the next function. It won't wait for the first function to finish to then go to the second function. This makes Javascript very efficient but adds a little more difficulties to the user. There are a few ways to go around this. I have linked articles to three methods.

            Callbacks: https://www.w3schools.com/js/js_callback.asp

            Promises: https://www.w3schools.com/js/js_promise.asp

            Async/Await: https://www.w3schools.com/js/js_async.asp

            You can choose whichever you like depending on your circumstances. Also there is something wrong with your code on the last line. Lockr.set('timeStamp', timeStamp()); You are passing in the timestamp function. When you do this remove the () from the timestamp. Anyways, I hope this helped.

            Source https://stackoverflow.com/questions/66926702

            QUESTION

            IBM Cloud Code Engine fails to build for private repo
            Asked 2021-Apr-01 at 07:16

            I'm using IBM Cloud Code Engine to build the source code from a private git repo. I have tried many times, and the buildrun always failed. Following are the steps I have done.

            1. Add my public key (/root/.ssh/id_rsa.pub) to my private repo as a deploy key

            2. Use IBM Cloud Code Engine CLI to create repo access credential ibmcloud ce repo create --name ibmgithub --key-path /root/.ssh/id_rsa --host github.ibm.com

            3. Use IBM Cloud Code Engine CLI to create a build and then submit a build run ibmcloud ce build create --name minion --image us.icr.io/mynamespace/myimg --rs ce-default-icr-us-south --git-repo-secret ibmgithub --source https://github.ibm.com/myaccount/myrepo --strategy dockerfile --size medium

            4. The build run always fails

            ...

            ANSWER

            Answered 2021-Apr-01 at 05:55

            Since you're using an ssh key, make sure the URL to your git repo starts with git@ instead of https://. So it should be git@github.ibm.com/myaccount/myrepo in your case.

            For further issues with failing builds, you can check the related troubleshooting buildruns section in the Code Engine docs.

            Source https://stackoverflow.com/questions/66891452

            QUESTION

            How do I loop through a string in makefile?
            Asked 2021-Mar-30 at 17:13

            I want to write a Makefile that will iterate through a string and print it word by word.

            Here is what I did in the Makefile:

            ...

            ANSWER

            Answered 2021-Mar-29 at 09:41

            Makefile variables do not use the same assignment syntax as shell variables. MINION="foo fou bar" will assign the string "foo fou bar" to the MINION Makefile variable, which will then be substituted into the shell command line as for n in "foo fou bar".

            Use instead

            Source https://stackoverflow.com/questions/66851784

            QUESTION

            Using React To Create a Loop That Updates A Number Value
            Asked 2021-Mar-29 at 00:47

            Trying to create an auto-clicker/idle game. So far the entire application works except for this loop. After the loop begins, if I update the counter, different values update in intervals. So my counter will display those different values, going back and forth between them depending on how many times I've tried to mess with the counter while its looping.

            I've tried using while loops, if statements, and for loops. And for each of those loops I've tried both setInterval() and setTimeout(). They either lead to the problem above, or the browser crashing.

            Here's a video of the issue: Youtube Link

            Here's the relevant code I've got currently:

            ...

            ANSWER

            Answered 2021-Mar-29 at 00:40

            If you're computing state based off of a previous state, you should use functional updates.

            Try passing setCounter a function that receives the previous state instead of using counter directly (do this with any of your useState hooks that depend on previous state):

            Source https://stackoverflow.com/questions/66847301

            QUESTION

            discord.py how to add an image to embed.add_field
            Asked 2021-Mar-22 at 18:55

            How can I add a local image in the value of embed.add_field(name=f'Last Match ({status})', value=

            ...

            ANSWER

            Answered 2021-Mar-22 at 12:40

            We cannot add image in the value field of add_field. Please refer to discord.Embed for all the functions of discord.Embed class.

            We use set_image to set image ( big in size ) and set_thumbnail to set an image to the top right of the embed ( like a logo ).

            Depending on your usage you can use anyone of them.

            If you want to embed local images you can refer to this page on discord py api.

            Source https://stackoverflow.com/questions/66734006

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install minion

            You can download it from GitHub.

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            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/iobio/minion.git

          • CLI

            gh repo clone iobio/minion

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            git@github.com:iobio/minion.git

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