ngs | Node.js : Getting | Runtime Evironment library

 by   jscomplete JavaScript Version: Current License: No License

kandi X-RAY | ngs Summary

kandi X-RAY | ngs Summary

ngs is a JavaScript library typically used in Server, Runtime Evironment, Nodejs applications. ngs has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

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              ngs has a low active ecosystem.
              It has 432 star(s) with 513 fork(s). There are 45 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 1 open issues and 0 have been closed. There are 7 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of ngs is current.

            kandi-Quality Quality

              ngs has 0 bugs and 0 code smells.

            kandi-Security Security

              ngs has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              ngs code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              ngs does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              ngs releases are not available. You will need to build from source code and install.

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            ngs Key Features

            No Key Features are available at this moment for ngs.

            ngs Examples and Code Snippets

            No Code Snippets are available at this moment for ngs.

            Community Discussions

            QUESTION

            snakemake - replacing command line parameters with wildcards by cluster profile
            Asked 2021-Jun-10 at 07:54

            I am writing a snakemake pipeline to eventually identify corona virus variants.

            Below is a minimal example with three steps:

            ...

            ANSWER

            Answered 2021-Jun-10 at 07:54

            I think the problem is that rule catFasta doesn't contain the wildcard barcode. If you think about it, what job name would you expect in {wildcards.barcode}.{rule}.{jobid}?

            Maybe a solution could be to add to each rule a jobname parameter that could be {barcode} for guppyplex and minion and 'all_barcodes' for catFasta. Then use --jobname "{params.jobname}.{rule}.{jobid}"

            Source https://stackoverflow.com/questions/67906871

            QUESTION

            snakemake - define input for aggregate rule without wildcards
            Asked 2021-Jun-08 at 15:40

            I am writing a snakemake to produce Sars-Cov-2 variants from Nanopore sequencing. The pipeline that I am writing is based on the artic network, so I am using artic guppyplex and artic minion.

            The snakemake that I wrote has the following steps:

            1. zip all the fastq files for all barcodes (rule zipFq)
            2. perform read filtering with guppyplex (rule guppyplex)
            3. call the artic minion pipeline (rule minion)
            4. move the stderr and stdout from qsub to a folder under the working directory (rule mvQsubLogs)

            Below is the snakemake that I wrote so far, which works

            ...

            ANSWER

            Answered 2021-Jun-08 at 15:40

            The rule that fails is rule guppyplex, which looks for an input in the form of {FASTQ_PATH}/{{barcode}}.

            Looks like the wildcard {barcode} is filled with barcode49/barcode49.consensus.fasta, which happened because of two reasons I think:

            First (and most important): The workflow does not find a better way to produce the final output. In rule catFasta, you give an input file which is never described as an output in your workflow. The rule minion has the directory as an output, but not the file, and it is not perfectly clear for the workflow where to produce this input file.

            It therefore infers that the {barcode} wildcard somehow has to contain this .consensus.fasta that it has never seen before. This wildcard is then handed over to the top, where the workflow crashes since it cannot find a matching input file.

            Second: This initialisation of the wildcard with sth. you don't want is only possible since you did not constrain the wildcard properly. You can for example forbid the wildcard to contain a . (see wildcard_constraints here)

            However, the main problem is that catFasta does not find the desired input. I'd suggest changing the output of minion to "nanopolish/{barcode}/{barcode}.consensus.fasta", since the you already take the OUTDIR from the params, that should not hurt your rule here.

            Edit: Dummy test example:

            Source https://stackoverflow.com/questions/67805295

            QUESTION

            Example node.js ftp server?
            Asked 2021-May-23 at 08:12

            I need to create a node.js app that connects to this ftp server and downloads files from this directory:

            ftp://www.ngs.noaa.gov/cors/rinex/2021/143/nynb

            I've tried following the ftp npm package docs but I feel like I am doing something horribly wrong:

            ...

            ANSWER

            Answered 2021-May-23 at 08:12

            There are a few points :

            • You're connecting to the local ftp with c.connect();. You need to connect to www.ngs.noaa.gov to download files from there.
            • This path cors/rinex/2021/143/nynb is a directory on the remote host. c.get doesn't work, you need to list all files in the directory then download them 1 by 1.

            The code below connect to the remote server and list all files in the directory

            Source https://stackoverflow.com/questions/67656194

            QUESTION

            Snakemake --use-conda with --cluster and NFS4 storage
            Asked 2021-Apr-01 at 11:12

            I am using snakemake in cluster mode to submit a simple one rule workflow to the HPCC, which runs Torque with several compute nodes. The NFSv4 storage is mounted on /data. There is a link /PROJECT_DIR -> /data/PROJECT_DIR/

            I submit the job using:

            ...

            ANSWER

            Answered 2021-Apr-01 at 11:12

            Solved by providing a jobscript (--jobscript SCRIPT) with:

            Source https://stackoverflow.com/questions/66868935

            QUESTION

            can't find DeviceDetectorModule In ngx-device-detector
            Asked 2021-Apr-01 at 08:14

            To install this library, run:

            ...

            ANSWER

            Answered 2021-Apr-01 at 08:14

            The answer is here:

            Module '"../../node_modules/ngx-device-detector/ngs-device-detector"' has no exported member 'Device Detector Module'.

            It means that the library does not have the DeviceDetectorModule. You're probably using old documentation.

            In the library docs it states that now you can use the service directly, without the module:

            Source https://stackoverflow.com/questions/66900715

            QUESTION

            awk script to cut/paste a string in a file
            Asked 2021-Feb-11 at 18:37

            i got a file formatted like that : (each space = tab separator)

            ...

            ANSWER

            Answered 2021-Feb-08 at 11:01

            With your shown samples, could you please try following. Written and tested in GNU awk.

            Source https://stackoverflow.com/questions/66066371

            QUESTION

            Functional-reactive operator in RxJava2 that produces new state from previous state and additional inputs
            Asked 2021-Jan-06 at 09:57

            I am working on a little showcase that is supposed to demonstrate how you can write interactive programs in a purely functional manner using functional-reactive programming (specifically RxJava2).

            My goal is to create a simple interactive game. The main function of the game (let's call it Next Game State, or NGS for short) takes the current state of the game, a user input, as well as a random number and computes the next state of the game from those three inputs. Fairly straightforward so far. The user inputs and the random numbers are Flowables that were created from Iterables or via generators. I envisioned that the game state itself would be a Flowable as well (but I might be wrong about that).

            I am struggling to find the right functional-reactive operator that applies the function to the three inputs and produces the next state of the game. Initially, I thought that Flowable.zip(source1, source2, source3, zipper) would be right operation: it could take the three flows and combine it via the NGS function into a new Flowable. That, unfortunately, does not account for the fact that the resulting Flowable itself needs to be one of the inputs of the zip operation, which seems an impossible setup. My next idea was to use Flowable.generate, but I need the two additional inputs from other Flowables to calculate the next state, and there is no way to feed those into the generate operator.

            In a nutshell, I'm trying to realize something similar to this (pseudo-)marble diagram:

            ...

            ANSWER

            Answered 2021-Jan-06 at 09:57
            Assumption

            The user-input and randome number are two separate streams, which could emit at any time by their own.

            Solution

            long story short, is there an existing operator that supports this behavior?

            Yes, there is. You could use #scan(seed, { current, upstream -> newValue }.

            Source https://stackoverflow.com/questions/65589721

            QUESTION

            Scrape data table using xpath in R
            Asked 2020-Nov-28 at 04:52

            I am fairly familiar with R, but have 0 experience with web scraping. I had looked around and cannot seem to figure out why my web scraping is "failing." Here is my code including the URL I want to scrape (the ngs-data-table to be specific):

            ...

            ANSWER

            Answered 2020-Nov-28 at 03:58

            The content of that table is generated dynamically: check it by saving the page from your browser (or, with your code, write_html(webpage,'test.html')) and then opening the saved file. So you probably can't capture it with rvest. Browser simulation packages like RSelenium will solve the problem.

            Source https://stackoverflow.com/questions/65045858

            QUESTION

            Get IP address of an azure Function running on Consumption plan
            Asked 2020-Nov-14 at 21:02

            I have two Azure functions, one is running on Premium plan that gives me "Outbound IP addresses" while the second one is running on consumption plan that only gives me "Virtual IP address". Below are screen-shots from their properties tab.

            I have Network Security Group for which I am trying to only allow Inbound traffic from these two azure functions. I have updated the NGS policy with "Outbound IP address" of the Premium Azure function, as well as the "Virtual IP Address" of Consumption plan.

            The premium function is able to communicate with the Network Security group afterwards, however, I am not able to get it to work for the Consumption plan.

            Is there a way I can get the "Outbound IP address" for functions running on Consumption plan?

            ...

            ANSWER

            Answered 2020-Oct-23 at 09:09

            What are the options I have to get this working?

            In Azure, Azure functions hosting on a different hosting plan have different features. Outbound IP restrictions do not support in the Consumption plan. It does not directly expose the outbound IP addresses of the function app. You can not add the "Virtual IP Address" of the Consumption plan. You could add the possibleOutboundIpAddresses of the Function app into the inbound of NSG rules.

            However, the possible outbound IP address list may change or update.

            When a function app that runs on the Consumption plan or the Premium plan is scaled, a new range of outbound IP addresses may be assigned. When running on either of these plans, you may need to add the entire data center to an allow list.

            Source https://stackoverflow.com/questions/64479446

            QUESTION

            Pandas Dataframe - Assy and Sub-Assy Numbering System without Loop
            Asked 2020-Oct-29 at 18:53

            I'm working with Pandas and I have a big part list with Main Assy, Sub Assy I, Sub Assy II and Sub Assy III. Only one "Assy" column per row can be filled with a string in the dataframe. The aim is to transfer the arrangement of the parts into a numbering system.The following table shows the expected outcome:

            ...

            ANSWER

            Answered 2020-Oct-29 at 18:53
            Key

            The change of output to be applied over each row can be fully determined by the current "level" and the previous level. Here "level" means the index number of the column having a non-zero entry.

            In other words, a state variable retaining the level of the previous row is sufficient for populating the current row correctly.

            Code

            Source https://stackoverflow.com/questions/64595790

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ngs

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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