ST-analyzer | Simulation Trajectory Analysis for Molecular Dynamics

 by   stanalyzer JavaScript Version: Current License: No License

kandi X-RAY | ST-analyzer Summary

kandi X-RAY | ST-analyzer Summary

ST-analyzer is a JavaScript library typically used in Telecommunications, Media, Media, Entertainment, Simulation applications. ST-analyzer has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

ST-analyzer is a standalone GUI toolset to perform various analyses of molecular dynamics simulation trajectories and provides a variety of analysis routines especially focused on membrane systems (e.g., lipid chain order parameter, lipid area, etc). Since trajectory files are generally too large to upload to a remote server, ST-analyzer has been developed in cross-platform by installing it into a server where trajectories are located. Once ST-analyzer is installed, user’s local machines governed by any types of existing OS can access the ST-analyzer through HTTP. ST-analyzer is also hosted at
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            kandi-support Support

              ST-analyzer has a low active ecosystem.
              It has 4 star(s) with 2 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              ST-analyzer has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of ST-analyzer is current.

            kandi-Quality Quality

              ST-analyzer has no bugs reported.

            kandi-Security Security

              ST-analyzer has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              ST-analyzer does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              ST-analyzer releases are not available. You will need to build from source code and install.
              Installation instructions are available. Examples and code snippets are not available.

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            ST-analyzer Key Features

            No Key Features are available at this moment for ST-analyzer.

            ST-analyzer Examples and Code Snippets

            No Code Snippets are available at this moment for ST-analyzer.

            Community Discussions

            QUESTION

            Rust's Reduce Method on Vec Reference
            Asked 2021-Jun-09 at 14:36

            I am trying to reduce a reference of a Vec to its sum so I can calculate its mean. I am running into complier issues though and I am not following how things are not being borrowed/referenced correctly.

            ...

            ANSWER

            Answered 2021-Jun-07 at 05:53

            Your issue here is that function passed to reduce must return a value of the same type as original iterator's item, which for iterators created through Iter trait is always &T. However, you can't return a reference from a function, because it would point to a freed stack frame.
            Your options are:

            • to use into_iter() instead, which consumes the collection it's called on and yields owned values,
            • to use iter().cloned() which will clone the values, again yielding an iterator over owned values, although it might be costly for non-primitive types.

            But in this specific case of summing up an iterator, you should just use iter().sum().

            Source https://stackoverflow.com/questions/67866298

            QUESTION

            VSCode Rust add semicolon on save
            Asked 2021-May-02 at 02:46

            I am using the Rust extension on vscode and NOT rust-analyzer. However, when I am saving a file, vscode is using rustfmt to format my file but it doesn't automatically insert semicolons. I have a trivial function like this

            ...

            ANSWER

            Answered 2021-May-02 at 02:46

            Unlike JavaScript, semicolons are not syntactically optional in Rust. Thus, leaving them out is a syntax error, not just a matter of style, and rustfmt (the standard Rust code formatting tool) doesn't ever attempt to fix any syntax errors, no matter how “obvious” they might be — if it reads a file with errors it will not make any formatting changes.

            (I don't know if there's a way to get rust-analyzer, vim, or VS Code to auto-insert semicolons as a matter of editing rather than formatting.)

            Source https://stackoverflow.com/questions/67350870

            QUESTION

            Match Arm saying type mismatch
            Asked 2021-Mar-12 at 19:23

            I have followed the Rust Book Chapter 2 to write the following program.

            Here, I really liked the match keyword
            #1

            ...

            ANSWER

            Answered 2021-Mar-12 at 19:23

            The mismatched type error is because the type of term is explicitly specified as u32, and the first match arm is implicitly returning u32, but the second match arm is returning the unit value (). There are only a few ways to exit a match expression, and here you will either need to return a u32 (which you probably don't want to do), or you can call return to exit from the function, or call panic!() to terminate the program. The continue keyword can only be used inside of a loop, but not matches. There is no equivalent to break from C switch statements unfortunately.

            If you didn't want to return from the function right away, you could rewrite this to store the Result returned by parse(), and then use an if let statement to check for an error, but it would likely be better to make a function that can be returned from, which has the match statement in it, and then calling that function from main(). Since the Rust compiler uses aggressive optimizations (at least when compiled with --release), it might actually eliminate the function entirely, so using lots of functions doesn't have the same penalty as it would in C

            Source https://stackoverflow.com/questions/66602980

            QUESTION

            How to get type hints to display?
            Asked 2021-Feb-14 at 00:30

            I have seen youtubers and such working on Rust in VSC with rust-analyzer plug-in where they get the optional type annotations displayed, even if it isn't necessarily written in the code. It's like I type foo(a,b) in the editor and it automagically displays foo(a: A, b :B) where the :A and :B are in faint grey possibly not even written in the file, just visual hint? It's nice and I can't figure out whether this is a feature of VSC or rust-analyzer? My rust-analyzer has the two settings Parameter Hints and TypeHints both set to enabled.

            ...

            ANSWER

            Answered 2021-Feb-14 at 00:30

            You're looking for parameter hints in this case. The function for which you want to display hints also needs to have more than one parameter.

            Make sure that the setting is enabled:

            Settings (UI)

            Source https://stackoverflow.com/questions/66174400

            QUESTION

            Continue Docstring in New Line in Rust and VSCode
            Asked 2021-Feb-09 at 14:30

            Consider the struct as below:

            ...

            ANSWER

            Answered 2021-Feb-09 at 14:25

            This feature does exist in rust-analyzer, but it needs to be enabled explicitly. To enable it, you need to add the following to your keybindings.json:

            Source https://stackoverflow.com/questions/66118871

            QUESTION

            How to enable real-time linting while typing with rust-analyzer in VSCode?
            Asked 2021-Jan-19 at 22:59

            I have rust-analyzer extension in VSCode.

            In settings I only changed Rust-analyzer › Check On Save: Command from check to clippy (this shouldn't matter).

            Problem is I don't see errors when I type, only after I save.

            Typed (no error):

            Saved (can see error):

            Can it be changed?

            ...

            ANSWER

            Answered 2021-Jan-19 at 22:53

            Problem is I don't see errors when I type, only after I save.

            Rust-analyzer does not support real-time linting (yet?).

            In short, rust-analyzer essentially runs cargo check. For small projects this can be quite fast. However, as project sizes increase, this can take significantly more time, which makes it unfeasible to check in real-time.

            See also issue #4185 and "Drawbacks" on the "First Release" post.

            The next best thing you can do (as you already know), is to use "check on save":

            Source https://stackoverflow.com/questions/65800478

            QUESTION

            What does the rust-analyzer error "could not resolve macro `$crate::format_args`" mean and how do I fix it?
            Asked 2020-Dec-09 at 20:44

            I'm using rust-analyzer version 0.2.408 on Visual Studio Code.

            I'm writing a command line application that involves centering text in the terminal. This is the function I wrote to do this:

            ...

            ANSWER

            Answered 2020-Dec-09 at 20:44

            This is a bug in rust-analyzer. For now, you can disable the warning in your settings.json:

            Source https://stackoverflow.com/questions/65223576

            QUESTION

            How can I generate doc in macros without transforming each line into a new paragraph?
            Asked 2020-Dec-07 at 15:26

            I learned from this answer that I can generate docs from macros:

            ...

            ANSWER

            Answered 2020-Dec-02 at 18:16

            Looks fine to me when documented via cargo doc with Rust 1.48.0:

            Source https://stackoverflow.com/questions/65112749

            QUESTION

            Method from included Trait implementation not found in scope in Rust
            Asked 2020-Sep-11 at 08:21

            I want to use two external libraries (geo-types-0.6.0 and geo-offset-0.1.0) to perform geometric algorithms.

            The example below seems fine: The Line type is defined in the library geo_types. The Offset trait moreover is written in geo_offset. Including this trait should lead to the Line type implementing method offset. However I get the following error:

            no method named `offset` found for struct `geo_types::line::Line` in the current scope

            In addition to that, the rust-analyzer in VS Code tells me, that the included trait Offset is not used. Why is that?

            ...

            ANSWER

            Answered 2020-Sep-11 at 08:21

            The geo-offset crate implements the Offset trait for geo::Line, not geo_types::Line (src - search for geo::Line). So even so geo::Line is just a re-export of geo_types::Line, the rust compiler doesn't see this deep and only knows about the Offset implementation for geo::Line.

            Source https://stackoverflow.com/questions/63843133

            QUESTION

            Rust sqlx: there is no query finalizers
            Asked 2020-Jul-25 at 08:18

            The issue is when I type code like this.

            ...

            ANSWER

            Answered 2020-Jul-25 at 08:18

            Browsing docs.rs a bit, I found that type sqlx::Query does not even have finalizers other than fetch. As for sqlx::query_as, the trait I was looking for was called PgQueryAs, which actually contains fetch_all, fetch_optional, fetch_one, etc. And adding use sqlx::postgress::PgQueryAs fixed the problem for me.

            Despite that, I still don't know a solution for evaluating macros to get decent types in my IDE.

            Source https://stackoverflow.com/questions/63082682

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ST-analyzer

            Although ST-analyzer is developed in Python codes, to cover the wide range of analysis demands and to maintain the cross-platform characteristics, some external python modules and programs are required. For the users who only need to run particular modules, this documentation clearly distinct ‘required modules’ and ‘optional modules’ by notice them as ‘required’ and ‘optional’ in the rest of context. > For more about ST-analzyer, please refer ST-analyzer tutorial through http://im.bioinformatics.ku.edu/st-analyzer/tutorials.html.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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