MESmerize | Platform for Calcium Imaging analysis | Data Visualization library

 by   kushalkolar Jupyter Notebook Version: 0.8.0 License: GPL-3.0

kandi X-RAY | MESmerize Summary

kandi X-RAY | MESmerize Summary

MESmerize is a Jupyter Notebook library typically used in Healthcare, Pharma, Life Sciences, Analytics, Data Visualization applications. MESmerize has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Mesmerize is a platform for the annotation and analysis of neuronal calcium imaging data. Mesmerize encompasses the entire process of calcium imaging analysis from raw data to interactive visualizations. Mesmerize allows you to create FAIR-functionally linked datasets that are easy to share. The analysis tools are applicable for a broad range of biological experiments and come with GUI interfaces that can be used without requiring a programming background. Associated bioRxiv paper:
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              MESmerize has a low active ecosystem.
              It has 22 star(s) with 12 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 8 open issues and 27 have been closed. On average issues are closed in 26 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of MESmerize is 0.8.0

            kandi-Quality Quality

              MESmerize has no bugs reported.

            kandi-Security Security

              MESmerize has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              MESmerize is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              MESmerize releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            MESmerize Key Features

            No Key Features are available at this moment for MESmerize.

            MESmerize Examples and Code Snippets

            Installation,Virtual/Conda Environments
            Jupyter Notebookdot img1Lines of Code : 3dot img1License : Strong Copyleft (GPL-3.0)
            copy iconCopy
            pip install mesmerize
            
            pip install --upgrade pip setuptools
            pip install tensorflow~=1.15
              

            Community Discussions

            QUESTION

            What is the difference between s.lower().count("earth") and s.upper().count("Earth")?
            Asked 2020-Oct-27 at 22:02

            Today I received a task to count word "earth" in a text using python-3. I know for sure that I have to use s.count but in text the word is written in both upper and lower registers. I found out that s.lower().count("earth") is what I need, but I don't understand why s.upper().count("earth") or s.lower().count("Earth") or s.upper().count("Earth") do not? I just need an explanation. Here is the text:

            ...

            ANSWER

            Answered 2020-Oct-27 at 20:26

            Calling s.lower() will make your string s all in lower case letters. On a string of all small letters you then call count("earth") because there are no capital letters left in your string.

            Source https://stackoverflow.com/questions/64562238

            QUESTION

            Why is UTF-8 coded on 2 bytes for a U+1xxxx character?
            Asked 2019-Oct-21 at 06:16

            I'm trying to figure how C handles character codes in Unicode. I set my locale to LC_ALL "fr_CA.UTF8" then input a char with wscanf() (as an array of wchar_t...). I then explore each byte and I find something strange. I entered a treble key ( "" copied from a web page) that is U+1d11e. This is actually 3 bytes so I expected to have 2 wchar_t. I got: 0x1e, 0xd1, 0x00, 0x00, the last two ones being the null ending char. Here is my code:

            ...

            ANSWER

            Answered 2019-Oct-21 at 06:16

            You would see what you expected if you printed the bytes making up the wchar_t values correctly, or if you just skipped that and printed their values without trying to break them up into bytes:

            Source https://stackoverflow.com/questions/58480007

            QUESTION

            How to Remove “Powered by ManyChat” footer from a messenger bot
            Asked 2019-May-27 at 18:34

            I am developing a chat bot for the messenger platform, but I found myself mesmerized by the fact that “ManyChat” appears on the footer of the users text input field.

            I have become an admin of that page and proceed to remove many chat from the list of connected apps for that page, but the footer is still there.

            Maybe I have to call the messenger platform API in order to change some property that isn’t available from the Facebook Pages User Interface. But nothing in the documentation mentions anything about a persistent footer on the page.

            Does anyone have any clue of how to remove this?

            ...

            ANSWER

            Answered 2019-May-27 at 18:34

            Have you tried to reset the chatbot's persistent menu? This can be done with sending a POST HTTP request to Facebook Messenger API as explained here:

            https://developers.facebook.com/docs/messenger-platform/send-messages/persistent-menu

            Source https://stackoverflow.com/questions/55312936

            QUESTION

            How to create a Code that generates other code
            Asked 2019-Apr-29 at 10:08

            Since I started learning python a few months back, I have been mesmerized about how with the simple code you could achieve complex tasks.

            So, I have been trying to do something like this,

            ...

            ANSWER

            Answered 2019-Apr-29 at 10:08

            i think you are searching for eval function :

            Python eval() The eval() method parses the expression passed to this method and runs python expression (code) within the program.

            In simple terms, the eval() method runs the python code (which is passed as an argument) within the program.

            The syntax of eval() is:

            Source https://stackoverflow.com/questions/55900322

            QUESTION

            Need more understanding on python fuzz partial ratio
            Asked 2018-Dec-13 at 06:22

            I am using python fuzzywuzzy on an enterprise level to match 2 strings. It works fine in most of the cases but giving unexpected results in the below mentioned scenario:

            ...

            ANSWER

            Answered 2018-Dec-13 at 06:22

            fuzzywuzzy uses Levenshtein distance which means it does compare all characters including spaces and symbols such as ':'.

            partial_ratio compares two strings, but it is allowed to cut the longer string to the length of the shorter string.

            In your case, shorter string is 'ja rule:mesmerize' with length 17. When the string is compared, longer string is cut to that size.

            With this information in mind, let's compare your outputs. We can see that the first long string does not have : in the end of 'ja rule' but the second one does. There are many possible other factors, but this could be the main reason for your outcome.

            I'm sure more careful analysis will reveal more about the score. The implementation of patial_ratio is found here https://github.com/seatgeek/fuzzywuzzy/blob/master/fuzzywuzzy/fuzz.py#L34.

            Source https://stackoverflow.com/questions/53755558

            QUESTION

            Wordpress, How to change the Post Header Title to display the Post Category?
            Asked 2018-Jun-15 at 20:27

            In the theme we're using, Mesmerize-Pro, for all posts, it's displaying the post title in two places:

            1. The (hero title) header, and
            2. The actual post title.

            Example: (Link Removed)

            I'd love to change the top most hero title to instead display the post category.

            I'm able to change the post title to the category, via functions.php, but that makes less sense.

            Thank you for any help.

            -e

            Details:

            ...

            ANSWER

            Answered 2018-Jun-14 at 16:56

            Looking at the theme, it seems a bit overly complex in how it determines the hero title. If there's no override options in the theme (I didn't install it to check), there does appear to a mesmerize_header_title filter you can hook into, it's apparently how they change the title on WooCommerce pages natively in the theme.

            One thing to note is that there can be many categories on a post, so typically you'll only want to show the first one. We can use get_the_category() to return an array of WP_Term objects, and apply the first one to the header title filter:

            Source https://stackoverflow.com/questions/50862316

            QUESTION

            ObservableBuffer giving IndexOutOfBounds in Scala
            Asked 2017-Jun-05 at 18:08

            I am mesmerized. The below code is giving me an indexoutofbound error. But if I were to delete the slashes enabling for(j <- i until tmpArray.length) it would work. I really do not understand why it is happening, and would appreciate an explanation.

            ...

            ANSWER

            Answered 2017-Jun-05 at 17:20

            You're modifying the array as you "iterate" over it.

            You are actually iterating over the range 0 until tmpArray.length, which is calculated up front. At some point, you reduce the length of the array (or, I assume so, as I can't find remove on the Array class). But it's still going to continue the iteration up to whatever the last index was when you created the range.

            When you uncomment the inner for block, you're making it recompute the range for each step of the outer for. And it just so happens that the j range will simply have nothing in it if i >= tmpArray.length. So it inadvertently guards against that failure.

            This is very C-style (imperative) code. It looks like all you're trying to do is remove some items from an array. That's what filter is for.

            Source https://stackoverflow.com/questions/44373801

            QUESTION

            Erlang Keyfind not finding
            Asked 2017-Mar-19 at 09:56

            I have following stucture:

            ...

            ANSWER

            Answered 2017-Mar-19 at 09:56

            Pids have invisible part called creation:

            http://erlang.org/pipermail/erlang-questions/2014-September/081178.html

            In case of node restarts this invisible part can change and it is actually a good thing, because that might be completely other Pid now. It is problematic that they are shown as the same thing when printed. To see that they are actually different, you can use term_to_binary and check last byte.

            Creation is always 0 on local node and 1, 2 or 3 when it is a remote pid. When you send pids between nodes they are automatically translated, but if you for example store them as string and then build them back with list_to_pid creation will be 0 and the pids won't compare.

            Source https://stackoverflow.com/questions/42877680

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install MESmerize

            You can install mesmerize natively using conda or virtual environments. If you want a quick and easy installation you can import a VM that comes with mesmerize pre-installed and ready-to-go with all features.

            Support

            Documentation is available here: http://docs.mesmerizelab.org/.
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            Install
          • PyPI

            pip install mesmerize

          • CLONE
          • HTTPS

            https://github.com/kushalkolar/MESmerize.git

          • CLI

            gh repo clone kushalkolar/MESmerize

          • sshUrl

            git@github.com:kushalkolar/MESmerize.git

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