BioNavi-NP | Biosynthesis Navigator for Natural Products

by prokia Jupyter Notebook Version: Current License: No License

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kandi X-RAY | BioNavi-NP Summary

BioNavi-NP is a Jupyter Notebook library. BioNavi-NP has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

source code for the paper "deep learning driven biosynthesis pathways navigation for natural products with bionavi-np" in nature communications. the server can be found here. bionavi-np requires anaconda with python 3.7 or later, cudatoolkit=11.1. you will wish to install bionavi-np in a virtual environment to prevent conflicting dependencies. bionavi-np has been tested on ubuntu 18.04, with four gpus (nvidia rtx3090). installation should take no longer than 20 minutes on a modern server. demo code for multi-step planning has been placed inrun_biosynthesis.py. this demo now will take only 20 seconds with single gpu (nvidia rtx3090). one need to first download the checkpoints and unzip under biosynthesis/singlestep/checkpoints/ to run the demo.

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Support

BioNavi-NP has a low active ecosystem.

It has 25 star(s) with 12 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 5 have been closed. On average issues are closed in 3 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of BioNavi-NP is current.

Quality

BioNavi-NP has no bugs reported.

Security

BioNavi-NP has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

BioNavi-NP does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

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BioNavi-NP releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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BioNavi-NP Key Features

No Key Features are available at this moment for BioNavi-NP.

BioNavi-NP Examples and Code Snippets

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Community Discussions

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Vulnerabilities

No vulnerabilities reported

Install BioNavi-NP

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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