Circos

Can someone help me ? How can I add my circos function in my data? when i try i get an error message and it doesn't produce any results I want to do a donut figure like the representation number 1 but i have one other resultat that we can see in the other picture. Trying to follow this guide

My data is lile this :

I've created an html file with an R package that is called BioCircos (represents defense systems on a genome). The html file includes an tag that contains the Circos graph and scripts, that lets the user see more information in hover mode. I'm sending the file through Flask API to React.js Component in order to view it on the application. However, I can only present the picture without the scripts. I have tried the below steps:

1. sending the entire html page to the component and used dangerouslySetInnerHTML or InnerHTML.
2. send partial html file that includes only the and his parent tags, and two related scripts, moreover I've put 5 more related scripts to the head tag of the application. I'm attaching the react component we want to put the picture in, and the html file in the link (it's too big for here).

Link to the HTML file - https://drive.google.com/file/d/1ZAcK3o-4Kwmw2NzsRohO9IqjFheYSwU-/view?usp=sharing

I would like the colours to be behind the numbers on this plot. Right now we cannot read all the numbers because one of the value is too high. What should I add to my code to make the colours in the background?

My code looks like this:

I have a dataset where the presence/absence of mutations in 40 particular genes has been recorded comparing normal tissue (e.g. lung tissue) vs a tumour from that tissue (e.g. lung tumor) for twenty tissue types. I am struggling to find the best way to visualise this data.

A subset of the data:

I'm trying to generate a circos plot with a simple genomic notation from BED files. However, when I use circos.genomeRect this results in an error, or in a track that does not plot rectangles, but semicircles as I show below.

Consider the following reproducible example:

Following on from this example a few years ago I would like to colour code the segment labels in a chordDiagram using the circlize package in R.

Documentation in ?circos.text tells me that I should use the set this using the argument col in the graphical par parameters. However, par(col) does not accept a vector of colours.

Can someone please advice how to do this? Many thanks.

Example code here using circlize package in R.

I'm trying to plot a single circular clustered heatmap with dendrogram with R "circlize" package. The two column expression data is available from this pastebin link

I'm using the following code for plotting, mostly lifted from the circlize manual:

I created a chord diagram in R using the circlize package. I noticed that this graphic is not being saved as a ggplot object. I am trying to make the graphic an object so I can export it to excel. Any suggestions?

I would like to make a circos-like plot to visualize SNPs only (with multiple tracks for SNPs attributes). It could be done either with python, R or I am happy to consider other languages.

So far, I have taken a look at the circlize R package. However, I get the error "Range of the sector ('C') cannot be 0" when initializing the circos plot. I believe that this error arises from the fact that I have discrete data (SNPs) instead of having data for all positions. Or maybe this is because I have some data points that are repeated.

I have simplified my data below and show the code that I have tried so far: