dragonflye | Assemble bacterial isolate genomes from Nanopore reads

by rpetit3 Perl Version: v1.1.0 License: GPL-3.0

X-Ray Key Features Code Snippets(3)Community Discussions Vulnerabilities Install Support

kandi X-RAY | dragonflye Summary

dragonflye is a Perl library. dragonflye has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Dragonflye is a pipeline that aims to make assembling Oxford Nanopore reads quick and easy. Still working on the quick part, but I think the easy part is there. Dragonflye currently supports Flye, Miniasm and Raven assemblers, and Racon and Medaka polishers.

Support

Quality

Security

License

Reuse

Support

dragonflye has a low active ecosystem.

It has 68 star(s) with 5 fork(s). There are 2 watchers for this library.

It had no major release in the last 12 months.

There are 4 open issues and 14 have been closed. On average issues are closed in 32 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of dragonflye is v1.1.0

Quality

dragonflye has no bugs reported.

Security

dragonflye has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

dragonflye is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

dragonflye releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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dragonflye Key Features

No Key Features are available at this moment for dragonflye.

dragonflye Examples and Code Snippets

dragonflye,Usage

Perl

Lines of Code : 46

License : Strong Copyleft (GPL-3.0)

Copy

Dragonflye - A very fast flye

SYNOPSIS
  De novo assembly pipeline for bacterial isolates with Nanopore reads
USAGE
  dragonflye [options] --outdir DIR --reads READS.fastq.gz
GENERAL
  --help          This help
  --version       Print version and ex

dragonflye,Quick Start

Perl

Lines of Code : 15

License : Strong Copyleft (GPL-3.0)

Copy

dragonflye --reads my-ont.fastq.gz --outdir dragonflye --gsize 5000000
... LOG TEXT ...
[dragonflye] Final assembly contigs: /home/robert_petit/repos/dragonflye/temp/dragonflye/contigs.fa
[dragonflye] It contains 3 (min=4864) contigs totalling 493984

dragonflye,Installation

Perl

Lines of Code : 5

License : Strong Copyleft (GPL-3.0)

Copy

# With conda
conda create -n dragonflye -c conda-forge -c bioconda dragonflye

# With Mamba (much quicker)
mamba create -n dragonflye -c conda-forge -c bioconda dragonflye

Community Discussions

No Community Discussions are available at this moment for dragonflye.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install dragonflye

Dragonflye is available from Bioconda. Dragonflye includes a lot of programs, so it can take conda a while to solve the environment. Because of this, I personally use Mamba to install it, because it's so much faster.