cdhit | Automatically exported from code.google.com/p/cdhit

cdhit is a Perl library. cdhit has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Requirements Since 4.8.1, cd-hit supports .gz format input file. This requires zlib library. zlib should be install in most Linux systems, so cd-hit should be compiled without issue. If your system don't have zlib, please install it first. * On Ubuntu, to install zlib: sudo apt install zlib1g-dev * On CentOS, to install zlib: sudo yum install zlib-devel. Having problems to compile Please contact the author. For cd-hit-auxtools cd cd-hit-auxtools make. Compile cd-hit on MacOS To install CD-HIT on MacOS, first install gcc on your system. To use Homebrew (see Then locate the path to your g++ executable, (e.g. /usr/local/Cellar/gcc/6.3.0_1/bin/g++-6, note: yours g++ path is likely to be different), then use command like this: make CC=/usr/local/Cellar/gcc/6.3.0_1/bin/g++-6. For psi-cd-hit please download BLAST+ (not legacy BLAST) and install the executables in your $PATH. For more information, please visit Most up-to-date documents are available at cd-hit is also available as web server, visit for web server address.