Formatic | Extensible form automation library for Codeigniter | Form library

I am working on Next Generation Sequencing (NGS) analysis of DNA. I am using SeqIO Biopython module to parse the DNA libraries in Fasta format. I want to filter the unique clones (unique records) only. I am using the following python code for this purpose.

I already referred this post here but it has no response.

Am using a public github package here to copy all the formatting from one excel file to another excel file.

By formatting, I mean the color, font, freeze panes etc.

In bioinformatics we have the bgzip file, which is block-compressed, meaning that you can compress a file (let's say a CSV), and then if you want to access some data in the middle of that file, you can decompress only the middle chunk, rather than the entire file.

As is explained here, Arrow (and therefore Feather v2, the file format) seems to support chunked reads and writes, and also compression. However it isn't clear if the compression applies to the entire file, or if individual chunks can be decompressed. This is my questions: can we separately compress chunks of an Arrow/Feather v2 and then later decompress a single chunk without decompressing everything?

I am working on 16s data and try to format an OTU table to upload it to a different tool.

Here is my TSV table:

It is supposed to look like this:

So I need R to count the number of semicolons ";" in each cell in column "taxonomy" and if the number is smaller than 6 I need R to add the required number of semincolons to make it six semicolons per cell. I am new to the bioinformatics field so any help would be much appreciated!

I tried

As a start-up, we are currently developing our website. We have a bit of a programming background, but mainly in Bio-informatics, so HTML and Javascript are unfamiliar. So that's why we will ask this 'stupid' question. We are currently working in WordPress, and we have an issue with the spacing within our Footer Note. There is a dot between the items, but the spacing between these items and dots isn't the same. So it is visually uneven. So the dot has to be there, but the spacing should be even. We have looked at the code, but we can't find this spacing problem. This photo represents the problem, to show it visually.

Besides that, we use the following code for the Footer

I need to convert data from csv format which have a lot of records (about 3 thousands) to list of objects / dicts. I started with Pandas but now, I am not sure it was a good choice. Files contains 5 columns. The structure of csv files are looks like:

I have successfully installed Cytoscape.

As far as I can find, there is only one tutorial about loading Seurat objects into WGCNA (https://ucdavis-bioinformatics-training.github.io/2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF/scrnaseq_analysis/scRNA_Workshop-PART6.html). I am really new to programming so it's probably just my inexperience, but I am not sure how to load my Seurat object into a format that works with WGCNA's tutorials (https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/).

Here is what I have tried thus far:

This tries to replicate datExpr and datTraits from part I.1:

I have done a lot of coding to take an HTML item from a page using Beautiful Soup and translate it into JSON. However, I still have one issue: When I open the final JSON files, they all have a backslash before the quotation marks. I know this is because I had to convert the HTML to a string and then use str.replace to do all the formatting. I am looking for a short and simple code to add that will remove the backslashes from the final result.

Here is my code.

Note: The HTML file was saved as the authorID with HTML, so GVcmmoEAAAAJ.html