C-PAC | Configurable Pipeline for the Analysis of Connectomes | Data Visualization library

 by   FCP-INDI Python Version: v1.8.5 License: LGPL-3.0

kandi X-RAY | C-PAC Summary

kandi X-RAY | C-PAC Summary

C-PAC is a Python library typically used in Analytics, Data Visualization, D3 applications. C-PAC has no bugs, it has no vulnerabilities, it has build file available, it has a Weak Copyleft License and it has low support. You can download it from GitHub.

A configurable, open-source, Nipype-based, automated processing pipeline for resting state fMRI data. Designed for use by both novice users and experts, C-PAC brings the power, flexibility and elegance of Nipype to users in a plug-and-play fashion; no programming required.
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              C-PAC has a low active ecosystem.
              It has 49 star(s) with 34 fork(s). There are 9 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 347 open issues and 794 have been closed. On average issues are closed in 1417 days. There are 27 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of C-PAC is v1.8.5

            kandi-Quality Quality

              C-PAC has no bugs reported.

            kandi-Security Security

              C-PAC has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              C-PAC is licensed under the LGPL-3.0 License. This license is Weak Copyleft.
              Weak Copyleft licenses have some restrictions, but you can use them in commercial projects.

            kandi-Reuse Reuse

              C-PAC releases are available to install and integrate.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed C-PAC and discovered the below as its top functions. This is intended to give you an instant insight into C-PAC implemented functionality, and help decide if they suit your requirements.
            • Run a CPAC pipeline
            • Format incl list
            • Extract parameters from a csv file
            • Retrieve BIDS data directory
            • Get scan parameters
            • Try to fetch a value from the given parameters
            • Checks the value for a parameter
            • Overridden function to overwrite the ANTs warps
            • Get the CPAC provenance for a resource
            • Send all pending procs to the worker
            • Perform a freesurfer on a given subject
            • Generate XCP QC
            • Freesurfer preprocessing for preprocessing
            • Hardcoded registration
            • Distortion of the FSL
            • Warp a time series to a T1 template
            • Warp a time series to a functional time series
            • Compute the reho matrix of a timeseries
            • Perform core registration
            • Create a FAST segment for a tissue segment
            • Create a temporary template
            • BOLD the FSM using FSL - AF - A filter
            • Resample a single functional time series to T1template
            • Resample time series to T1 template
            • Distribution of FASP FASTA pipeline
            • Distribute the distortion of a folded image
            Get all kandi verified functions for this library.

            C-PAC Key Features

            No Key Features are available at this moment for C-PAC.

            C-PAC Examples and Code Snippets

            No Code Snippets are available at this moment for C-PAC.

            Community Discussions

            QUESTION

            Getting AUCs for several predictors and outcomes in a dataframe
            Asked 2021-Jun-10 at 01:24

            I want to be able to do lots of AUCs at once from the pROC package. Here is a simple dataframe with two predictors and a binary outcome and my attempt to use sapply() along with auc() and roc() from the pROC library. What am I doing wrong?

            ...

            ANSWER

            Answered 2021-Jun-10 at 01:22

            You can use lapply in the following way -

            Source https://stackoverflow.com/questions/67912697

            QUESTION

            Why ISO 8583 unpacking produces invalid values?
            Asked 2020-Dec-19 at 23:01

            I need to unpack and get the MTI , present data element values of

            ...

            ANSWER

            Answered 2020-Dec-10 at 19:32

            This isn't a complete answer but it's too big for a comment, and may help you figure out the issue.

            Note:

            Source https://stackoverflow.com/questions/65240718

            QUESTION

            Unexpected clustering errors (partitioning around mediods)
            Asked 2020-Aug-17 at 17:12

            I am using the fpc package for determining the optimal number of clusters. The pamk() function takes a dissimilarity matrix as an argument and does not require the user to specify k. According to the documentation:

            pamk() This calls pam and clara for the partitioning around medoids clustering method (Kaufman and Rouseeuw, 1990) and includes two different ways of estimating the number of clusters.

            but when I input two very similar matricies - foo and bar (data below), the function errors out on the second matrix (bar)

            ...

            ANSWER

            Answered 2020-Aug-17 at 17:12

            bar has n=5 columns, so the max(krange) has to be <= n-1, thus 4. The default krange is 2:10, hence the error. You may have to pass an appropriate krange; try:

            Source https://stackoverflow.com/questions/63454262

            QUESTION

            Buildroot custom package not built automatically
            Asked 2020-Jan-03 at 09:49

            I have created a custom package for buildroot and put it in an external buildroot tree. I have enabled it by using make menuconfig BR_EXTERNAL=../buildroot-external

            It is build successfully when triggered with make mypackage.

            However when run make clean && make BR_EXTERNAL=../buildroot-external everything rebuilds while my custom package is simply forgotten. I want it to be automatically compiled as all the other packages.

            As I am still developing that package the sourcecode is stored locally which is configured in the ../buildroot-external/locals.mk

            For completeness those are the config-files for defining the package:

            buildroot-external/package/mypackage/Config.in ...

            ANSWER

            Answered 2020-Jan-03 at 08:15

            Enter make menuconfig, enable your package, exit saving changes. Now make will build your package too.

            This is because by default nearly all packages are disabled since Buildroot cannot know what you need on your target root filesystem.

            Source https://stackoverflow.com/questions/59561687

            QUESTION

            Publish posts with custom post type from R via RWordpress and knit2wp
            Asked 2019-Feb-07 at 15:17

            I am currently using the RWordpress-package from Duncan Temple Lang and the knitr-package from Yihui Xie to generate blog posts directly from R. For regular posts that works fine, however I would like to generate a post with a previously custom-made post-type. Via knit2wp i seem only to generate a regular new post, edit a post already published or generate a new page.

            If I'd like to write a post by hand I would visit a page within the Wordpress-backend. For a regular post that would be

            ...

            ANSWER

            Answered 2019-Feb-07 at 15:17

            Perhaps not direct an answer but I found a solution using curl-commands (cf Media Api Reference of WordPress). In that way I sent a command simply as a system call. I concatenate several strings up to a curl command, eg:

            Source https://stackoverflow.com/questions/54020361

            QUESTION

            Buildroot - Github package re-extracted at every build
            Asked 2019-Jan-14 at 21:40

            I'm currently trying to integrate a package from github which implements a MTP-responder in userspace.

            I'm using buildroot 2017.08.

            I have created both Config.in and umtprd.mk files with the following content.

            I also patch sources in order to replace some fields' value into the configuration file given with the package.

            Config.in

            ...

            ANSWER

            Answered 2019-Jan-10 at 19:55

            You don't seem to be doing anything wrong, but indeed, Buildroot is not supposed to re-extract and re-patch this package. So there must be something happening between your two "make" invocations that cause this to happen.

            Could you provide the full log (unmodified) of the following sequence of commands:

            Source https://stackoverflow.com/questions/54131103

            QUESTION

            Buildroot clean my dependencies after change my source code
            Asked 2018-Dec-27 at 17:14

            Im using buildroot to make a custom linux image, and it is working.

            The problem is when i run "make" to finish the image after change my package "source code", because it cleans my custom package dependencies and all header include are not found.

            I have a dependency with structure:

            ...

            ANSWER

            Answered 2018-Dec-27 at 13:51

            Usually it is enough to remove your output/build/hello-1.0 folder and type make again

            Buildroot used to use stamp files in the output folder, which indicates which targets have been built. removing these files may allow you to rebuild parts of your image without much overhead.

            Source https://stackoverflow.com/questions/53918204

            QUESTION

            Chocolatey: Simple Automatic Upgrades of Local Folder Packages
            Asked 2018-Feb-21 at 16:42

            I have a folder like c:\chocopkg where I put a couple of packages which I can't find on the official repo. Creating nupkg archives was really simple and fun. Instead, the Automatic Updater (AU) is too much for me: there is no simple cinst au; one should clone a git repo and also setup a new one even for a local run.

            What I need is very simple. I added a script \tools\chocolateyBeforeUpgrade.ps1, with trivial Invoke-WebRequest regexps. It checks for new versions on the vendor's site and can update chocolateyInstall.ps1.

            My first question is: Is there some config option to have cup all running a script like this before checking for package status?

            If this is not possible, it would be also simple to wrap cup in a, say, cup2 checking and running automatic upgrades, but what file should this wrapper edit before giving control to actual cup? cup page just says it "upgrades a package or a list of packages", but I don't understand how. I can speculate it looks at the .nuspec version. However in a local share there is no such info without unzipping the .nupkg file and for remote packages this would require a possibly large download.

            ...

            ANSWER

            Answered 2018-Feb-21 at 16:42

            AU essentially does what you'll need, even if it is a little more setup and work. I know it may feel like too much to start, but you can just start with the files that run the updates.

            What I need is very simple. I added a script \tools\chocolateyBeforeUpgrade.ps1, with trivial Invoke-WebRequest regexps. It checks for new versions on the vendor's site and can update chocolateyInstall.ps1.

            This isn't going to help with upgrades as it is a chicken and egg scenario. You need the updated package first to be able to upgrade a package. So putting something into beforemodify or the install script is only going to help you on installation. BeforeModify only runs from the already installed package on upgrade/uninstall, so unless there

            Source https://stackoverflow.com/questions/48711662

            QUESTION

            Unnest lists of list from an elastic Search result in R
            Asked 2017-Dec-23 at 16:58

            EDIT 1: the problem in more simple terms (for the whole issue, check the Original Edit)

            How can I unlist a list of key, values pairs within a dataframe, knowing that the number of pairs may vary.

            For instance:

            ...

            ANSWER

            Answered 2017-Dec-23 at 16:58

            I finally manage to solve the problem, thanks to this post and some transformation steps. The solution is not very elegant though, but it works:

            Source https://stackoverflow.com/questions/47872543

            QUESTION

            Buidling a new package for buildroot: hub-ctrl
            Asked 2017-Nov-16 at 09:55

            I'm trying to build a new package for using in buildroot this useful program to power on/off the different USB ports from the raspberry pi.

            The GIT repository is on this site:

            https://github.com/codazoda/hub-ctrl.c

            And this is the hub-ctrl.mk I've built:

            ...

            ANSWER

            Answered 2017-Nov-16 at 09:55

            I've followed the indications of Peter Korsgaard. I'm using the package uhubctl from buildroot-2017.11-rc1 and I've added this package to my buildroot-2016.02 custom platform. Everything is working fine, and I'm able to power off the usb ports in my HW platform.

            Thank you very much to Peter Korsgaard for his advice.

            Source https://stackoverflow.com/questions/47289419

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install C-PAC

            You can download it from GitHub.
            You can use C-PAC like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            User documentation can be found here: https://fcp-indi.github.io/docs/latest/user. Developer documentation can be found here: https://fcp-indi.github.io/docs/latest/developer and here: https://github.com/FCP-INDI/.github/blob/primary/CONTRIBUTING.md. Documentation pertaining to this latest release can be found here: https://fcp-indi.github.io/docs/latest/user/release_notes/latest.
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