C-PAC | Configurable Pipeline for the Analysis of Connectomes | Data Visualization library
kandi X-RAY | C-PAC Summary
kandi X-RAY | C-PAC Summary
A configurable, open-source, Nipype-based, automated processing pipeline for resting state fMRI data. Designed for use by both novice users and experts, C-PAC brings the power, flexibility and elegance of Nipype to users in a plug-and-play fashion; no programming required.
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Run a CPAC pipeline
- Format incl list
- Extract parameters from a csv file
- Retrieve BIDS data directory
- Get scan parameters
- Try to fetch a value from the given parameters
- Checks the value for a parameter
- Overridden function to overwrite the ANTs warps
- Get the CPAC provenance for a resource
- Send all pending procs to the worker
- Perform a freesurfer on a given subject
- Generate XCP QC
- Freesurfer preprocessing for preprocessing
- Hardcoded registration
- Distortion of the FSL
- Warp a time series to a T1 template
- Warp a time series to a functional time series
- Compute the reho matrix of a timeseries
- Perform core registration
- Create a FAST segment for a tissue segment
- Create a temporary template
- BOLD the FSM using FSL - AF - A filter
- Resample a single functional time series to T1template
- Resample time series to T1 template
- Distribution of FASP FASTA pipeline
- Distribute the distortion of a folded image
C-PAC Key Features
C-PAC Examples and Code Snippets
Community Discussions
Trending Discussions on C-PAC
QUESTION
I want to be able to do lots of AUCs at once from the pROC package. Here is a simple dataframe with two predictors and a binary outcome and my attempt to use sapply() along with auc() and roc() from the pROC library. What am I doing wrong?
...ANSWER
Answered 2021-Jun-10 at 01:22You can use lapply
in the following way -
QUESTION
I need to unpack and get the MTI , present data element values of
...ANSWER
Answered 2020-Dec-10 at 19:32This isn't a complete answer but it's too big for a comment, and may help you figure out the issue.
Note:
QUESTION
I am using the fpc
package for determining the optimal number of clusters. The pamk()
function takes a dissimilarity matrix as an argument and does not require the user to specify k
. According to the documentation:
pamk() This calls pam and clara for the partitioning around medoids clustering method (Kaufman and Rouseeuw, 1990) and includes two different ways of estimating the number of clusters.
but when I input two very similar matricies - foo
and bar
(data below), the function errors out on the second matrix (bar)
ANSWER
Answered 2020-Aug-17 at 17:12bar
has n=5
columns, so the max(krange)
has to be <= n-1, thus 4. The default krange is 2:10, hence the error. You may have to pass an appropriate krange
; try:
QUESTION
I have created a custom package for buildroot and put it in an external buildroot tree.
I have enabled it by using make menuconfig BR_EXTERNAL=../buildroot-external
It is build successfully when triggered with make mypackage
.
However when run make clean && make BR_EXTERNAL=../buildroot-external
everything rebuilds while my custom package is simply forgotten.
I want it to be automatically compiled as all the other packages.
As I am still developing that package the sourcecode is stored locally which is configured in the ../buildroot-external/locals.mk
For completeness those are the config-files for defining the package:
buildroot-external/package/mypackage/Config.in ...ANSWER
Answered 2020-Jan-03 at 08:15Enter make menuconfig
, enable your package, exit saving changes.
Now make
will build your package too.
This is because by default nearly all packages are disabled since Buildroot cannot know what you need on your target root filesystem.
QUESTION
I am currently using the RWordpress-package from Duncan Temple Lang and the knitr-package from Yihui Xie to generate blog posts directly from R. For regular posts that works fine, however I would like to generate a post with a previously custom-made post-type. Via knit2wp i seem only to generate a regular new post, edit a post already published or generate a new page.
If I'd like to write a post by hand I would visit a page within the Wordpress-backend. For a regular post that would be
...ANSWER
Answered 2019-Feb-07 at 15:17Perhaps not direct an answer but I found a solution using curl-commands (cf Media Api Reference of WordPress). In that way I sent a command simply as a system call. I concatenate several strings up to a curl command, eg:
QUESTION
I'm currently trying to integrate a package from github which implements a MTP-responder in userspace.
I'm using buildroot 2017.08.
I have created both Config.in
and umtprd.mk
files with the following content.
I also patch sources in order to replace some fields' value into the configuration file given with the package.
Config.in
...ANSWER
Answered 2019-Jan-10 at 19:55You don't seem to be doing anything wrong, but indeed, Buildroot is not supposed to re-extract and re-patch this package. So there must be something happening between your two "make" invocations that cause this to happen.
Could you provide the full log (unmodified) of the following sequence of commands:
QUESTION
Im using buildroot to make a custom linux image, and it is working.
The problem is when i run "make" to finish the image after change my package "source code", because it cleans my custom package dependencies and all header include are not found.
I have a dependency with structure:
...ANSWER
Answered 2018-Dec-27 at 13:51Usually it is enough to remove your output/build/hello-1.0
folder and type make
again
Buildroot used to use stamp files in the output folder, which indicates which targets have been built. removing these files may allow you to rebuild parts of your image without much overhead.
QUESTION
I have a folder like c:\chocopkg
where I put a couple of packages which I can't find on the official repo.
Creating nupkg archives was really simple and fun. Instead, the Automatic Updater (AU) is too much for me: there is no simple cinst au
; one should clone a git repo and also setup a new one even for a local run.
What I need is very simple. I added a script \tools\chocolateyBeforeUpgrade.ps1
, with trivial Invoke-WebRequest
regexps. It checks for new versions on the vendor's site and can update chocolateyInstall.ps1
.
My first question is: Is there some config option to have cup all
running a script like this before checking for package status?
If this is not possible, it would be also simple to wrap cup
in a, say, cup2
checking and running automatic upgrades, but what file should this wrapper edit before giving control to actual cup
?
cup page just says it "upgrades a package or a list of packages", but I don't understand how. I can speculate it looks at the .nuspec
version. However in a local share there is no such info without unzipping the .nupkg
file and for remote packages this would require a possibly large download.
ANSWER
Answered 2018-Feb-21 at 16:42AU essentially does what you'll need, even if it is a little more setup and work. I know it may feel like too much to start, but you can just start with the files that run the updates.
What I need is very simple. I added a script
\tools\chocolateyBeforeUpgrade.ps1
, with trivialInvoke-WebRequest
regexps. It checks for new versions on the vendor's site and can updatechocolateyInstall.ps1
.
This isn't going to help with upgrades as it is a chicken and egg scenario. You need the updated package first to be able to upgrade a package. So putting something into beforemodify or the install script is only going to help you on installation. BeforeModify only runs from the already installed package on upgrade/uninstall, so unless there
QUESTION
EDIT 1: the problem in more simple terms (for the whole issue, check the Original Edit)
How can I unlist a list of key, values pairs within a dataframe, knowing that the number of pairs may vary.
For instance:
...ANSWER
Answered 2017-Dec-23 at 16:58I finally manage to solve the problem, thanks to this post and some transformation steps. The solution is not very elegant though, but it works:
QUESTION
I'm trying to build a new package for using in buildroot this useful program to power on/off the different USB ports from the raspberry pi.
The GIT repository is on this site:
https://github.com/codazoda/hub-ctrl.c
And this is the hub-ctrl.mk I've built:
...ANSWER
Answered 2017-Nov-16 at 09:55I've followed the indications of Peter Korsgaard. I'm using the package uhubctl from buildroot-2017.11-rc1 and I've added this package to my buildroot-2016.02 custom platform. Everything is working fine, and I'm able to power off the usb ports in my HW platform.
Thank you very much to Peter Korsgaard for his advice.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install C-PAC
You can use C-PAC like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page