coronavirus | Folding @ home COVID-19 efforts | Theme library

 by   FoldingAtHome Python Version: Current License: No License

kandi X-RAY | coronavirus Summary

kandi X-RAY | coronavirus Summary

coronavirus is a Python library typically used in Healthcare, Pharma, Life Sciences, User Interface, Theme applications. coronavirus has no bugs, it has no vulnerabilities and it has medium support. However coronavirus build file is not available. You can download it from GitHub.

Folding@home COVID-19 efforts
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            kandi-support Support

              coronavirus has a medium active ecosystem.
              It has 1106 star(s) with 81 fork(s). There are 74 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 10 open issues and 26 have been closed. On average issues are closed in 35 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of coronavirus is current.

            kandi-Quality Quality

              coronavirus has no bugs reported.

            kandi-Security Security

              coronavirus has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              coronavirus does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              coronavirus releases are not available. You will need to build from source code and install.
              coronavirus has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed coronavirus and discovered the below as its top functions. This is intended to give you an instant insight into coronavirus implemented functionality, and help decide if they suit your requirements.
            • Serializes the given data to an output file .
            • Deserialize a file .
            Get all kandi verified functions for this library.

            coronavirus Key Features

            No Key Features are available at this moment for coronavirus.

            coronavirus Examples and Code Snippets

            Coronavirus-simple-detection,Author Detail,Detail :
            Javadot img1Lines of Code : 55dot img1License : Permissive (Apache-2.0)
            copy iconCopy
            Person person = new Person();
            
            person.setFirstName("Amir");
            person.setLastName("Shokri");
            person.setAge(24);
            person.setGender(1);
            person.setNationality(Country.countryList.Iran);
            
            person.setFeverDegree(37);
            person.setCough(false);
            person.setFetigue(f  
            Coronavirus Tracker API for Greece,Example,Querying
            Pythondot img2Lines of Code : 14dot img2License : Strong Copyleft (EUPL-1.2)
            copy iconCopy
            curl https://covid-19-greece.herokuapp.com/confirmed | json_pp
            
            {
              "cases": [
                {
                  "date": "2020-01-22",
                  "confirmed": 0
                },
                {
                  "date": "2020-01-23",
                  "confirmed": 0
                },
                ...
              ]
            }   
              
            Coronavirus Tracker API for Greece,Example,Javascript
            Pythondot img3Lines of Code : 14dot img3License : Strong Copyleft (EUPL-1.2)
            copy iconCopy
            let url = "https://covid-19-greece.herokuapp.com/confirmed"
            
            let response = await fetch(url);
            
            if (response.ok) // if HTTP-status is 200-299
            { 
                // get the response body 
                let json = await response.json();
                console.log(json)
            } 
            else 
            {
                a  

            Community Discussions

            QUESTION

            requests.exceptions.InvalidURL: Failed to parse: in python
            Asked 2022-Mar-29 at 12:37

            So i wrote this code for now, to get news from a specific topic from cnn right now im getting an error here is the code:

            ...

            ANSWER

            Answered 2022-Mar-14 at 01:25

            I tested it myself and you should change this line of code as follows:

            from: source = requests.get(url) to: page = source.text

            Extra informations:

            I found that u can use this search.api.cnn.io as follows and make directly into json as i wrote the code and what you need to do is extract information which you need.

            Source https://stackoverflow.com/questions/71461952

            QUESTION

            text processing question: remove rows where one column does not contain a particular value
            Asked 2022-Feb-11 at 14:35

            I have a tab delimited file that looks like this:

            ...

            ANSWER

            Answered 2022-Feb-11 at 13:04
            awk '
                NR==1                              # Print first line (header)
                $NF != "SARS-CoV2" { bad[$1] }     # Collect primary keys of "bad"  records based on content in last field
                $NF == "SARS-CoV2" { good[$1]=$0 } # Collect primary keys of "good" records with opposite check
                END {
                    for(v in bad) delete good[v]   # Remove primary keys from "good" records that also appear in "bad" records
                    for(v in good) print good[v]   # Print the "good" rows
                }
            ' file
            

            Source https://stackoverflow.com/questions/71069288

            QUESTION

            avioid repetition converting multiple strings to floats
            Asked 2022-Jan-20 at 16:12

            I am running a flask app that effectively scrapes data from https://coronavirus.data.gov.uk/ api and I have a question about formatting (trying not to be repetitive)

            So the code in question takes in arguments and parameters for the data and is as follows:

            ...

            ANSWER

            Answered 2022-Jan-20 at 15:42

            As a note, I am not entirely certain (since I like to try out code, but can't execute yours, and I am not sure if I understood your question correctly), but you might try this:

            Source https://stackoverflow.com/questions/70788970

            QUESTION

            Removing specific from beautifulsoup4 web crawling results
            Asked 2021-Dec-20 at 08:56

            I am currently trying to crawl headlines of the news articles from https://7news.com.au/news/coronavirus-sa.

            After I found all headlines are under h2 classes, I wrote following code:

            ...

            ANSWER

            Answered 2021-Dec-20 at 08:56
            What happens?

            Your selection is just too general, cause it is selecting all

            and it do not need a .decompose() to fix the issue.

            How to fix?

            Select the headlines mor specific:

            Source https://stackoverflow.com/questions/70418326

            QUESTION

            How to use pd.read_html() to extract table data from a website without error in Python?
            Asked 2021-Dec-01 at 16:13
            I have created a program that collects table data at the following location. And when extracting data in soup library, it appears fine, but when converting html codes to a table using pandas library pd.read_html(table) I get an error message, I don't know why

            this code bellow :

            ...

            ANSWER

            Answered 2021-Sep-02 at 21:40

            Convert the soup to string before passing in into .read_html():

            Source https://stackoverflow.com/questions/69037256

            QUESTION

            Multiple requests causing program to crash (using BeautifulSoup)
            Asked 2021-Jun-15 at 19:45

            I am writing a program in python to have a user input multiple websites then request and scrape those websites for their titles and output it. However, when the program surpasses 8 websites the program crashes every time. I am not sure if it is a memory problem, but I have been looking all over and can't find any one who has had the same problem. The code is below (I added 9 lists so all you have to do is copy and paste the code to see the issue).

            ...

            ANSWER

            Answered 2021-Jun-15 at 19:45

            To avoid the page from crashing, add the user-agent header to the headers= parameter in requests.get(), otherwise, the page thinks that your a bot and will block you.

            Source https://stackoverflow.com/questions/67992444

            QUESTION

            How to extract all of original compounds if a substring is in them with re module?
            Asked 2021-Jun-08 at 16:59
            string= "'Patriots', 'corona2020','COVID-19','coronavirus','2020TRUmp','Support2020Trump','whitehouse','Trump2020','QAnon','QAnon2020',TrumpQanon"
            
            ...

            ANSWER

            Answered 2021-Jun-08 at 14:05

            I am converting every word to upper(or can be lower) so can match every similar word without small cap or capital difference with find

            Source https://stackoverflow.com/questions/67886028

            QUESTION

            what is NavigableString in this error refers to, and why that happened?
            Asked 2021-May-10 at 14:16
            from bs4 import BeautifulSoup
            import numpy as np
            import requests 
            from selenium import webdriver
            from nltk.tokenize import sent_tokenize,word_tokenize
            
            html = webdriver.Firefox(executable_path=r'D:\geckodriver.exe')
            html.get("https://www.tsa.gov/coronavirus/passenger-throughput")
            
            def TSA_travel_numbers(html):
            
                soup = BeautifulSoup(html,'lxml')
                for i,rows in enumerate(soup.find('div',class_='view-content'),1):
                    # print(rows.content)
                    for header in rows.find('tr'):
                
            
                        number = rows.find_all('td',class_='views-field views-field field-2021-throughput views-align-center')
            
                        print(number.text)
            
            
            TSA_travel_numbers(html.page_source)
            
            ...

            ANSWER

            Answered 2021-May-10 at 14:16

            As the error says, you can't iterate over an int, which is your rows.

            Also, there's no need for a webdriver as data on the page is static.

            Here's my take on it:

            Source https://stackoverflow.com/questions/67464770

            QUESTION

            How to fix broken CSV file where column values are not formatted properly?
            Asked 2021-May-06 at 00:10

            I have a dataframe that has a weird format that I am having difficulty formatting it to a desired format. I just need the columns first_name, last_name, domain, Email, Verification and status but am not sure how to remove it when it is in this format.

            ...

            ANSWER

            Answered 2021-May-04 at 18:18

            You can read the file with pandas.read_csv() with error_bad_lines=False:

            Source https://stackoverflow.com/questions/67389735

            QUESTION

            (OpenNMT) Spanish to English Model Improvement
            Asked 2021-May-01 at 18:25

            I’m currently trying to train a Spanish to English model using yaml scripts. My data set is pretty big but just for starters, I’m trying to get a 10,000 training set and 1000-2000 validation set working well first. However, after trying for days, I think I need help considering that my validation accuracy goes down the more I train while my training accuracy goes up.

            My data comes from the ES-EN coronavirus commentary data set from ModelFront found here https://console.modelfront.com/#/evaluations/5e86e34597c1790017d4050a. I found the parallel sentences to be pretty accurate. And I’m using the first 10,000 parallel lines from the dataset, skipping sentences that contain any digits. I then take the next 1000 or 2000 for my validation set and the next 1000 for my test set, only containing sentences without numbers. Upon looking at the data, it looks clean and the sentences are lined up with each other in the respective lines.

            I then use sentencepiece to build a vocabulary model. Using the spm_train command, I feed in my English and Spanish training set, comma separated in the argument, and output a single esen.model. In addition, I chose to use unigrams and a vocab size of 16000

            As for my yaml configuration file: here is what I specify

            My source and target training data (the 10,000 I extracted for English and Spanish with “sentencepiece” in the transforms [])

            My source and target validation data (2,000 for English and Spanish with “sentencepiece” in the transforms [])

            My vocab model esen.model for both my Src and target vocab model

            Encoder: rnn Decoder: rnn Type: LSTM Layers: 2 bidir: true

            Optim: Adam Learning rate: 0.001

            Training steps: 5000 Valid steps: 1000

            Other logging data.

            Upon starting the training with onmt_translate, my training accuracy starts off at 7.65 and goes into the low 70s by the time 5000 steps are over. But, in that time frame, my validation accuracy goes from 24 to 19.

            I then use bleu to score my test set, which gets a BP of ~0.67.

            I noticed that after trying sgd with a learning rate of 1, my validation accuracy kept increasing, but the perplexity started going back up at the end.

            I’m wondering if I’m doing anything wrong that would make my validation accuracy go down while my training accuracy goes up? Do I just need to train more? Can anyone recommend anything else to improve this model? I’ve been staring at it for a few days. Anything is appreciated. Thanks.

            !spm_train --input=data/spanish_train,data/english_train --model_prefix=data/esen --character_coverage=1 --vocab_size=16000 --model_type=unigram

            ...

            ANSWER

            Answered 2021-May-01 at 18:25

            my validation accuracy goes down the more I train while my training accuracy goes up.

            It sounds like overfitting.

            10K sentences is just not a lot. So what you are seeing is expected. You can just stop training when the results on the validation set stop improving.

            That same basic dynamic can happen at greater scale too, it'll just take a lot longer.

            If your goal is to train your own reasonably good model, I see a few options:

            1. increase the size to 1M or so
            2. start with a pretrained model and fine-tune
            3. both

            For 1, there are at least 1M lines of English:Spanish you can get from ModelFront even after filtering out the noisiest.

            For 2, I know the team at YerevaNN got winning results at WMT20 starting with a Fairseq model and using about 300K translations. And they were able to do that with fairly limited hardware.

            Source https://stackoverflow.com/questions/67341777

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install coronavirus

            You can download it from GitHub.
            You can use coronavirus like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            You can help out by downloading the Folding@home client to your computer, installing it, and selecting "COVID-19" from the Web Control panel:. We're especially in need of more donors with GPUs to help out, and all our GPU projects are devoted to potential drug targets for COVID-19 right now. For more information about Folding@home, check out https://foldingathome.org.
            Find more information at:

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          • HTTPS

            https://github.com/FoldingAtHome/coronavirus.git

          • CLI

            gh repo clone FoldingAtHome/coronavirus

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            git@github.com:FoldingAtHome/coronavirus.git

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