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Python client for RiskIQ API services
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QUESTION
I'm constructing a library "mylib" that is C++ header-only and has a Python API using pybind11. I want to use "mylib" both as CMake target, containing compile instructions, and as name of the Python API. However, this leads to a name conflict.
Problem descriptionConsider the following file structure:
...ANSWER
Answered 2021-Apr-23 at 08:00pybind11_add_module
is just a wrapper around add_library
, this is explicitely written in the documentation for that function. So, most of the "tricks", which works for the common libraries, works for python modules too.
That is, if you want resulted file to be named as mylib.so
but cannot afford you to use mylib
as a target name, then you could use any other name for the target but adjust OUTPUT_NAME property for that target. For example:
QUESTION
I recently developed a fully-functioning random forest regression SW with scikit-learn RandomForestRegressor model and now I'm interested in comparing its performance with other libraries. So I found a scikit-learn API for XGBoost random forest regression and I made a little SW test with an X feature and Y datasets of all zeros.
...ANSWER
Answered 2021-Apr-16 at 10:58It seems that XGBoost includes a global bias in the model, and that this is fixed at 0.5 rather than being calculated based on the input data. This has been raised as an issue in the XGBoost GitHub repository (see https://github.com/dmlc/xgboost/issues/799). The corresponding hyperparameter is base_score
, if you set it equal to zero your model will predict zero as expected.
QUESTION
On the documentation page for xgboost for python we see a feature_types
https://xgboost.readthedocs.io/en/latest/python/python_api.html parameters but have no idea what are the possible values.
The documentation is really bad.
What are the possible values for feature_types
?
ANSWER
Answered 2021-Apr-14 at 06:58The documentation seems poor as you say, searching through the XGBoost source code on Github gives some tests that show these options:
- int
- float
- q: quantitative
- i: indicator
While it is a bit difficult to figure out what these mean, some other sites list some additional information:
- i: "i means this feature is binary indicator feature"
- q: "means this feature is a quantitative value, such as age, time, can be missing"
- int: "means this feature is integer value (when int is hinted, the decision boundary will be integer)"
Link: another StackOverflow post that mentions the q and i types.
In XGBoosts core.py code you can also find a comment on types:
QUESTION
I want to get the maximum matching of a graph.
Now, I use the algorithm in Networkx: nx.algorithms.bipartite.matching.hopcroft_karp_matching(G)
However, I didn't find a similar algorithm in SNAPenter link description here.
And for NetworKit, I found this page:enter link description here. But I don't know how to use it.
Any ideas? How to use NetworKit/SNAP to get the maximum matching of a graph?
...ANSWER
Answered 2021-Mar-29 at 07:35Concerning NetworKit: an algorithm to compute an exact maximum matching is not yet provided, but you can use networkit.matching.PathGrowingMatcher
, which implements the linear time 1/2-approximation algorithm for maximum matching by Drake and Hougardy [1]. You can use it as follows:
QUESTION
I've created a Oriented Bounding Box from a clustered sub point cloud of a Velodyne Lidar (rotating laser sensor). I want to get the orientation of the Bounding Box (preferable as a quaternion).
...ANSWER
Answered 2021-Mar-21 at 20:50Looking at the link you shared, I see the OBB object has the following properties: center, extent and R. If you can access them then you can get position and orientation. Center is a point (x,y,z), extent are three lengths in x, y and z direction and R is a rotation matrix. Columns of R are three orthogonal unit-vectors pointing on rotated x, y and z directions.
I think you are interested in orientation, so R is the orientation matrix. You can convert it to quaternion using the matrix-to-quaternion method on this page: https://www.euclideanspace.com/maths/geometry/rotations/conversions/matrixToQuaternion/
QUESTION
The Python API doesn't give much more information other than that the seed=
parameter is passed to numpy.random.seed
:
seed (int) – Seed used to generate the folds (passed to numpy.random.seed).
But what features of xgboost
use numpy.random.seed
?
- Running
xgboost
with all default settings still produces the same performance even when altering the seed. - I have already been able to verify
colsample_bytree
does so; different seeds yield different performance. - I have been told it is also used by
subsample
and the othercolsample_*
features, which seems plausible since any form of sampling requires randomness.
What other features of xgboost
rely on numpy.random.seed
?
ANSWER
Answered 2020-Dec-31 at 18:11Well, if you want the exhaustive list, you could look at the source at GitHub. Searching with keywords on github gives good insignt.
search for 'rand' - 15 results
search for 'seed' and python filter - 20 results
QUESTION
I'm a wee bit stuck.
I have a 3D point cloud (an array of (n,3) vertices), in which I am trying to generate a 3D triangular mesh from. So far I have had no luck.
The format my data comes in:
- (x,y) values in regularly spaced (z) intervals. Think of the data as closed loop planar contours stored slice by slice in the z direction.
- The vertices in my data must be absolute positions for the mesh triangles (i.e. I don't want them to be smoothed out such that the volume begins to change shape, but linear interpolation between the layers is fine).
Illustration:
...ANSWER
Answered 2020-Sep-04 at 06:49Actually there are two ways of having meshlab functionality in python:
- The first is MeshLabXML (https://github.com/3DLIRIOUS/MeshLabXML ) a third party, is a Python scripting interface to meshlab scripting interface
- the second is PyMeshLab (https://github.com/cnr-isti-vclab/PyMeshLab ) an ongoing effort done by the MeshLab authors, (currently in alpha stage) to have a direct Python bindings to all the meshlab filters
QUESTION
I'm not very familiar with parallelization in Python and I'm getting an error when trying to train a model on multiple training folds in parallel. Here's a simplified version of my code:
...ANSWER
Answered 2020-Oct-28 at 09:26I found a solution, maybe it will be useful for someone else. You can see details with code examples here: https://github.com/mlflow/mlflow/issues/3592
QUESTION
I have a problem here.
I don't know why this code does not work.
...ANSWER
Answered 2020-Aug-07 at 12:42Because you use single quotes twice you get:
print(f'{ newline }### Initializing project with the following tasks: { '
instead of
QUESTION
I'm trying to integrate MLFlow to my project. Because I'm using tf.keras.fit_generator()
for my training so I take advantage of mlflow.tensorflow.autolog()
(docs here) to enable automatic logging of metrics and parameters:
ANSWER
Answered 2020-Jul-06 at 04:08After searching around, I found this issue related to my problem above. Actually, all my metrics just logged once each training (instead of each epoch as my intuitive thought). The reason is I didn't specify the every_n_iter
parameter in mlflow.tensorflow.autolog()
, which indicates how many 'iterations' must pass before MLflow logs metric executed (see the docs). So, changing my code to:
mlflow.tensorflow.autolog(every_n_iter=1)
fixed the problem.
P/s: Remember that in TF 2.x, an 'iteration' is an epoch (in TF 1.x it's a batch).
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You can use python_api like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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