Dcm2Bids | Reorganising NIfTI files from dcm2niix into the Brain | Messaging library

by UNFmontreal Python Version: 2.1.9 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | Dcm2Bids Summary

Dcm2Bids is a Python library typically used in Messaging applications. Dcm2Bids has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Your friendly DICOM converter. dcm2bids reorganises NIfTI files using dcm2niix into the Brain Imaging Data Structure (BIDS).

Support

Quality

Security

License

Reuse

Support

Dcm2Bids has a low active ecosystem.

It has 119 star(s) with 76 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 20 open issues and 107 have been closed. On average issues are closed in 398 days. There are 7 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of Dcm2Bids is 2.1.9

Quality

Dcm2Bids has 0 bugs and 0 code smells.

Security

Dcm2Bids has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Dcm2Bids code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

Dcm2Bids is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

Dcm2Bids releases are available to install and integrate.

Build file is available. You can build the component from source.

It has 1122 lines of code, 79 functions and 18 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed Dcm2Bids and discovered the below as its top functions. This is intended to give you an instant insight into Dcm2Bids implemented functionality, and help decide if they suit your requirements.

Run the main loop
Return data for dstSidecar
Move files to destination
Run dcm2niix
Create a scaffold
Write lines to a text file
Parse arguments
Run the dcm2iix command
Execute dcm2iix command
Run a shell command
Label of modality
Prepend a string to a given character
Load the data from a JSON file
Load a JSON file
Return the prefix of the object
Return True if session has no session
Setup logger
Setup logging
Validate dicom directories
Validate a path
Load the dcm2b version
Get the version of dcm2niix
Return the name of the directory to use
Build an argument parser
Ensure all output directories are empty
Custom labels

Get all kandi verified functions for this library.

Dcm2Bids Key Features

No Key Features are available at this moment for Dcm2Bids.

Dcm2Bids Examples and Code Snippets

No Code Snippets are available at this moment for Dcm2Bids.

Community Discussions

Trending Discussions on Dcm2Bids

How to supply a Windows batch file with variables pulled from a CSV file

QUESTION

How to supply a Windows batch file with variables pulled from a CSV file

Asked 2017-Jun-13 at 17:54

I have a CSV file with 3 columns and many rows.

I want to run a command in a Windows cmd prompt, and supply input variables to the command from a CSV file, such that:

...

ANSWER

Answered 2017-Jun-13 at 17:54

Assuming the code and sample file that you posted are accurate, then you have two unrelated problems.

1)
Your IN() clause uses single quotes, which means the FOR /F will try to execute the csv file rather than simply read the contents.

You must drop the single quotes

Source https://stackoverflow.com/questions/44508764

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Dcm2Bids

You can download it from GitHub.
You can use Dcm2Bids like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.