cgplot | comparative genome dot plot viewer | Data Visualization library

by dfguan Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | cgplot Summary

cgplot is a Python library typically used in Analytics, Data Visualization applications. cgplot has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However cgplot build file is not available. You can download it from GitHub.

a script for viewing sequence aligments and read-depth.

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cgplot has a low active ecosystem.

It has 7 star(s) with 0 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

cgplot has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of cgplot is current.

Quality

cgplot has 0 bugs and 0 code smells.

Security

cgplot has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cgplot code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cgplot is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cgplot releases are not available. You will need to build from source code and install.

cgplot has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

It has 348 lines of code, 13 functions and 2 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed cgplot and discovered the below as its top functions. This is intended to give you an instant insight into cgplot implemented functionality, and help decide if they suit your requirements.

Main function for contig
Function to plot the cgplot function
Calculate select_hits
Calculate the coverage for a given chromosome
Calculate the coords and covs
Parse a chromosome
Check if file exists

Get all kandi verified functions for this library.

cgplot Key Features

No Key Features are available at this moment for cgplot.

cgplot Examples and Code Snippets

No Code Snippets are available at this moment for cgplot.

Community Discussions

Trending Discussions on cgplot

How to draw Probability Density Function using line plots in IDL?

QUESTION

How to draw Probability Density Function using line plots in IDL?

Asked 2020-Jun-10 at 21:46

I have a vector containing values and I would like to draw a probability density function (PDF) graph for the values contained. Let's say I have a vector given by b=[1,1,3,4,5,2,3,5,1,4,2,4,1,1,4,2,3,5]. I can draw a histogram as follows

cghistoplot, b, binsize=1, xtitle='values', ytitle='freq', /fill

However, I want to draw the pdf using a line plot, i.e. I want y values to be normalized by the number of values in the vector (18 here). I know I can use cgplot to make line plots, but it needs x- and y-values.

...

ANSWER

Answered 2020-Jun-10 at 17:07

You can just use the HISTOGRAM built-in routine like the following:

Source https://stackoverflow.com/questions/62294362

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cgplot

This will generate a image showing how the query contigs 50F, 57F and 21F are mapped to 23M-28M region of chromsome 3L, and also read depth plot for the contigs are shown on the bottom.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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