Cutoff | source code for the Cutoff data augmentation approach | Natural Language Processing library
kandi X-RAY | Cutoff Summary
kandi X-RAY | Cutoff Summary
This repository contains source code necessary to reproduce the results presented in the following paper:. This project is maintained by Dinghan Shen. Feel free to contact dishen@microsoft.com for any relevant issues.
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- Generate the model
- Generates a beam search
- Adds a hyp to the beam
- Check if the optimizer has finished
- Load a pretrained model from a pretrained model
- HTTP GET method
- Return the path to a file or URL
- Download a file from the cache
- Create an AutoModel from a pretrained model
- Return a list of features
- Convert examples to features
- Convert an example example to features
- Computes log probabilities for prediction
- Wrapper for batch encoding
- Forward attention
- Add special tokens to the tokenizer
- Parse arguments into dataclasses
- Create a PretrainedConfig from a pretrained model
- Load weights from an xlnet model
- Create a Tokenizer from pretrained model
- Create a Token instance from a pretrained model
- Create a new AutoModel instance from a pretrained model
- Create an AutoModel instance from a pretrained model
- Encodes the given text using the given text pair
- Train the optimizer
- Computes prediction logits
Cutoff Key Features
Cutoff Examples and Code Snippets
Community Discussions
Trending Discussions on Cutoff
QUESTION
I am new to julia. If a run a program written in julia as
sachin@localhost:$ julia mettis.jl
then it runs sucessfully, without printing anything, though one print statement is in it.
And Secondly If run it as by going in julia:
...ANSWER
Answered 2022-Apr-11 at 11:40There is nothing special about a function called main
in Julia and defining a function is different from calling it. Consequently a file mettis.jl
with the following code:
QUESTION
I have 2 dataframes, df1 contains a groupID and continuous variables like so:
...ANSWER
Answered 2022-Apr-11 at 11:13Here's a way in dplyr
:
QUESTION
I have source (src
) image(s) I wish to align to a destination (dst
) image using an Affine Transformation whilst retaining the full extent of both images during alignment (even the non-overlapping areas).
I am already able to calculate the Affine Transformation rotation and offset matrix, which I feed to scipy.ndimage.interpolate.affine_transform
to recover the dst
-aligned src
image.
The problem is that, when the images are not fuly overlapping, the resultant image is cropped to only the common footprint of the two images. What I need is the full extent of both images, placed on the same pixel coordinate system. This question is almost a duplicate of this one - and the excellent answer and repository there provides this functionality for OpenCV transformations. I unfortunately need this for scipy
's implementation.
Much too late, after repeatedly hitting a brick wall trying to translate the above question's answer to scipy
, I came across this issue and subsequently followed to this question. The latter question did give some insight into the wonderful world of scipy
's affine transformation, but I have as yet been unable to crack my particular needs.
The transformations from src
to dst
can have translations and rotation. I can get translations only working (an example is shown below) and I can get rotations only working (largely hacking around the below and taking inspiration from the use of the reshape
argument in scipy.ndimage.interpolation.rotate
). However, I am getting thoroughly lost combining the two. I have tried to calculate what should be the correct offset
(see this question's answers again), but I can't get it working in all scenarios.
Translation-only working example of padded affine transformation, which follows largely this repo, explained in this answer:
...ANSWER
Answered 2022-Mar-22 at 16:44If you have two images that are similar (or the same) and you want to align them, you can do it using both functions rotate and shift :
QUESTION
I have a nested list, have_list
. At the center is a list with four vectors of integers, a
, b
, c
, d
.
For a
, b
, c
, d
, each has a unique cutoff
value. I would like to find the first positions when the integer is greater than the relevant cutoff value.
I can do this if a-d had the same cutoff
by:
ANSWER
Answered 2022-Mar-22 at 13:14You can use lapply
to move through the "Outer" lists, and Map
to compare each inner list to the corresponding cutoff:
QUESTION
hope everyone is safe and doing well during these crazy times we are dealing with. I have a question if you guys can help me. I have a form that I want to display some text next to the button that I created. I am using a label for this and I added a text. The problem is that my text does not show completely in the form. The label with the text is under the comment INPUT USER INFO LABEL. Here is the picture of the form as you can see the text cutoff on "butt" which should be "button...":
As you can see I still have space left in the form but my text is not display completely. I am assuming that a size is involved, some sort of coordinates I have set up is messing with my label and cutting it off. Could you guys lend me a pair of eyes on this matter and let me know why is this happening? Thank you in advance and peace and love fam!!!!!
...ANSWER
Answered 2022-Mar-17 at 18:47As per Santiago Squarzon request this was his answer. Just adding it here since it was the answer to my question.
"Seems like the text doesn't fit in the size of your label, have you tried tweaking."
$UserInfoLabel.Size = New-Object System.Drawing.Size(280,20)
QUESTION
I have a CSV data of 65K. I need to do some processing for each csv line which generates a string at the end. I have to write/append that string in a file.
Psuedo Code:
...ANSWER
Answered 2022-Feb-23 at 19:25Q : " Writing to a file parallely while processing in a loop in python ... "
A :
Frankly speaking, the file-I/O is not your performance-related enemy.
"With all due respect to the colleagues, Python (since ever) used GIL-lock to avoid any level of concurrent execution ( actually re-SERIAL-ising the code-execution flow into dancing among any amount of threads, lending about 100 [ms] of code-interpretation time to one-AFTER-another-AFTER-another, thus only increasing the interpreter's overhead times ( and devastating all pre-fetches into CPU-core caches on each turn ... paying the full mem-I/O costs on each next re-fetch(es) ). So threading is ANTI-pattern in python (except, I may accept, for network-(long)-transport latency masking ) – user3666197 44 mins ago "
Given about the 65k files, listed in CSV, ought get processed ASAP, the performance-tuned orchestration is the goal, file-I/O being just a negligible ( and by-design well latency-maskable ) part thereof ( which does not mean, we can't screw it even more ( if trying to organise it in another performance-devastating ANTI-pattern ), can we? )
Tip #1 : avoid & resist to use any low-hanging fruit SLOCs if The Performance is the goal
If the code starts with a cheapest-ever iterator-clause,
be it a mock-up for aRow in aCsvDataSET: ...
or the real-code for i in range( len( queries ) ): ...
- these (besides being known for ages to be awfully slow part of the python code-interpretation capabilites, the second one being even an iterator-on-range()-iterator in Py3 and even a silent RAM-killer in Py2 ecosystem for any larger sized ranges) look nice in "structured-programming" evangelisation, as they form a syntax-compliant separation of a deeper-level part of the code, yet it does so at an awfully high costs impacts due to repetitively paid overhead-costs accumulation. A finally injected need to "coordinate" unordered concurrent file-I/O operations, not necessary in principle at all, if done smart, are one such example of adverse performance impacts if such a trivial SLOC's ( and similarly poor design decisions' ) are being used.
Better way?
- a ) avoid the top-level (slow & overhead-expensive) looping
- b ) "split" the 65k-parameter space into not much more blocks than how many memory-I/O-channels are present on your physical device ( the scoring process, I can guess from the posted text, is memory-I/O intensive, as some model has to go through all the texts for scoring to happen )
- c ) spawn
n_jobs
-many process workers, that willjoblib.Parallel( n_jobs = ... )( delayed( <_scoring_fun_> )( block_start, block_end, ...<_params_>... ) )
and run thescoring_fun(...)
for such distributed block-part of the 65k-long parameter space. - d ) having computed the scores and related outputs, each worker-process can and shall file-I/O its own results in its private, exclusively owned, conflicts-prevented output file
- e ) having finished all partial block-parts' processing, the
main
-Python process can just join the already ( just-[CONCURRENTLY] created, smoothly & non-blocking-ly O/S-buffered / interleaved-flow, real-hardware-deposited ) stored outputs, if such a need is ...,
and
finito - we are done ( knowing there is no faster way to compute the same block-of-tasks, that are principally embarrasingly independent, besides the need to orchestrate them collision-free with minimised-add-on-costs).
If interested in tweaking a real-system End-to-End processing-performance,
start with lstopo
-map
next verify the number of physical memory-I/O-channels
and
may a bit experiment with Python joblib.Parallel()
-process instantiation, under-subscribing or over-subscribing the n_jobs
a bit lower or a bit above the number of physical memory-I/O-channels. If the actual processing has some, hidden to us, maskable latencies, there might be chances to spawn more n_jobs
-workers, until the End-to-End processing performance keeps steadily growing, until a system-noise hides any such further performance-tweaking effects
A Bonus part - why un-managed sources of latency kill The Performance
QUESTION
On the same machine the knitr + LaTeX compilation of the Rnw file below fails in RStudio with Invalid UTF-8 byte "97
LaTeX error; but compiles with TexShop. Here is the source code:
ANSWER
Answered 2022-Feb-23 at 16:18The problem seems to be the ×
in the intermediate .tex file.
You can avoid the problem by choosing an unicode aware engine, like lualatex or xelatex, to compile your document:
QUESTION
I need to implement a lowpass filter in Python, but the only module I can use is numpy (not scipy). I tried using np.fft.fft()
on the signal, then setting all frequencies which are higher than the cutoff frequency to 0 and then using np.fft.ifft()
.
Howerver this didn't work and I'm not shure how to apply the filter at all.
EDIT:
after changing np.abs()
to np.real()
the result was almost correct.
But in the spectrogram the amplitudes are smaller then in the original and the filterd refernce (difference of 6dB). So it looks like it's not completely right. Any Ideas what could be done to fix that?
my Lowpass Function should take the following arguments:
...ANSWER
Answered 2022-Jan-24 at 09:59I see that the comments of @Cris Luengo have already developed your solution into the right direction. The last thing you're missing now is that the spectrum you obtain from np.fft.fft
is composed of the positive frequency components in the first half and the 'mirrored' negative frequency components in the second half.
If you now set all components beyond your bandlimit_index
to zero, you're erradicating these negative frequency components. That explains the drop in signal amplitude of 6dB, you're eliminating half the signal power (+ as you already noticed every real signal has to have conjugate symmetric frequency spectrum). The np.fft.ifft
function documentation (ifft documentation) explains the expected format quite nicely. It states:
"The input should be ordered in the same way as is returned by fft, i.e.,"
- a[0] should contain the zero frequency term,
- a[1:n//2] should contain the positive-frequency terms,
- a[n//2 + 1:] should contain the negative-frequency terms, in increasing order starting from the most negative frequency.
That's essentially the symmetry you have to preserve. So in order to preserve these components just set the components between bandlimit_index + 1 -> (len(fsig) - bandlimit_index)
to zero.
QUESTION
I'm having trouble getting a table of results.
Command:
answer <- get_multimir(url = NULL, org = "hsa", mirna = "MIMAT0000450", target = NULL, disease.drug = "cancer", table = "validated", predicted.cutoff = NULL, predicted.cutoff.type = "p", predicted.site = "conserved", summary = FALSE, add.link = FALSE, use.tibble = TRUE, limit = NULL, legacy.out = FALSE)
When I am trying to create a table using:
write.table(answer,"C:\\Users\\Someone\\Desktop\\Rresults\\data.csv", row.names=FALSE)
it results in the following error:
...Error in as.data.frame.default(x[[i]], optional = TRUE) : cannot coerce class ‘structure("mmquery_bioc", package = "multiMiR")’ to a data.frame
ANSWER
Answered 2022-Jan-22 at 13:38get_multimir
is used to retrieve predicted and validated miRNA-target interactions and their disease and drug associations from the multiMiR package.
It returns an object of class mmquery_bioc
The error:
Error in as.data.frame.default(x[[i]], optional = TRUE) : cannot coerce class ‘structure("mmquery_bioc", package = "multiMiR")’ to a data.frame
is informing you that R does not know how to convert this object into a data frame.
It is not completely clear what you are trying to achieve but if I was to take a guess, perhaps you just need the data
slot from this object:
QUESTION
Let's say I have a dataset from a regular school in which students from different living areas are tested in math, English, and science. You need to do a retest if your score is 1SD below the mean and you'll fail if your score is 2SD below the mean.
I can easily compute the means, standard deviation, and these cutoffs. I'm using the nest
from the tidyverse
package. However, I would like to discover how many students were 1SD below and 2SD below the mean.
However, I don't know how to do these count
calculations to these results in an easy way.
Please check the dataset and the code I'm using to achieve the descriptive results:
...ANSWER
Answered 2021-Dec-25 at 23:55You could do something like this.
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Install Cutoff
You can use Cutoff like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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