datasketch | LSH Forest , Weighted MinHash | Hashing library
kandi X-RAY | datasketch Summary
kandi X-RAY | datasketch Summary
MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble
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Top functions reviewed by kandi - BETA
- Evaluate results
- Compute the similarity between each query
- Compute the distance between the ground truth values
- Compute recall
- Bootstrap sets from a set of sets
- Updates the hash function
- Merges two min hashes together
- Benchmark LSHensemble
- Insert entries into the set
- Index a set of entries
- Return True if all indexes are empty
- Query the sum of keys in the pool
- Add a key to the pool
- Perform jaccard search
- Adds a key to the hash
- Compute the optimal probability for a given threshold
- Compute the nearest neighbour between two sets
- Query the hash values of all hashes
- Save results to database
- Create storages
- Generate minhashes for a set of permutations
- Perform LSH forest search
- Queries the LSH algorithm
- Reads a set of sets from a file
- Search HNSW index using HNSW index
- Plots a matplotlib plot
- Create a list of objects from b
- Calculate the minimum hash value for an input vector
datasketch Key Features
datasketch Examples and Code Snippets
git clone git@github.com:xxcclong/GNN-Computing.git
cd artifact
mkdir build && cd build
cmake ..
make -j16
cp fig7.out ../Figure7/
cp fig8.out ../Figure8/
cp fig9.out ../Figure9/
cp fig10a.out ../Figure10/
cp fig10b.out ../Figure10/
cp fig11
@misc{lyu2021neural,
title={Neural OCR Post-Hoc Correction of Historical Corpora},
author={Lijun Lyu and Maria Koutraki and Martin Krickl and Besnik Fetahu},
year={2021},
eprint={2102.00583},
archivePrefix={arXiv},
git clone https://github.com/brendano/stanford_corenlp_pywrapper
cd stanford_corenlp_pywrapper
pip install .
cd ..
Community Discussions
Trending Discussions on datasketch
QUESTION
I prepared an installation of Apache Druid that takes data from a Kafka topic. It works very smoothly and efficiently.
I'm currently trying to implement some queries and I'm stuck in the count of rows (grouped by some fields) for which a column value is an outlier. In the normal SQL world, I will essentially compute the first and third quartiles (q1 and q3) and then use something like (I'm interested only in "right" outliers):
SUM(IF(column_value > q3 + 1.5*(q3-q1), 1, 0))
This approach makes use of cte and joins: I compute the quartiles in a cte with grouping and then I join it with the original table.
I was able to easily compute the quartiles and the outlier threshold with datasketch extension using a groupBy
query, but I'm not realizing how to perform a postAggregation that can perform the count.
In theory, I may implement a second query using the thresholds obtained in the first. Unfortunately, I can get hundreds of thousands of different values. That makes this approach unfeasible.
Do you have any suggestion on how to tackle this problem?
...ANSWER
Answered 2020-Apr-26 at 08:43As of version 0.18.0, Apache Druid supports joins. This solves the problem.
QUESTION
I installed druid from link attached here to install druid.
The following code has been added to the common.runtime.properties file .
...ANSWER
Answered 2019-Dec-17 at 12:48You use basic authentication. You should just be able to send your query to druid with an URL like this:
QUESTION
I have set up a micro-server of Druid on on-prem machine. I want to use HDFS as deep-storage of druid. I have used the following Druid Docs, [druid-hdfs-storage] fully qualified deep storage path throws exceptions and imply-druid docs as references.
I have made following changes in /apache-druid-0.16.0-incubating/conf/druid/single-server/micro-quickstart/_common/common.runtime.properties
...ANSWER
Answered 2019-Dec-12 at 11:09I resolved the issue by changing the hdp.version in the mapred-site.xml manually. I was getting following exception in middleManager.log
java.lang.IllegalArgumentException: Unable to parse '/hdp/apps/${hdp.version}/mapreduce/mapreduce.tar.gz#mr-framework' as a URI, check the setting for mapreduce.application.framework.path
But Still the segment metadata is showing Request failed with status code 404.
QUESTION
I have a dataframe similarly to:
...ANSWER
Answered 2019-May-23 at 14:29RDD`s to the rescue
QUESTION
I want to use MinHash LSH to bin a large number of documents into buckets of similar documents (Jaccard similarity).
The question: Is it possible to compute the bucket of a MinHash without knowing about the MinHash of the other documents?
As far as I understand LSH "just" computes a hash of the MinHashes. So it should be possible?
One implementation I find quite promissing is datasketch. I can query the LSH for documents similar to a given one after knowing the MinHash of all documents. However I see no way to get the bucket of a single document before knowing the other ones. https://ekzhu.github.io/datasketch/index.html
...ANSWER
Answered 2019-Jul-09 at 02:32LSH doesn't bucket entire documents, nor does it bucket individual minhashes. Rather, it buckets 'bands' of minhashes.
LSH is a means of both reducing the number of hashes stored per document, and reducing the number of hits found when using these hashes to search for similar documents. It achieves this by combining multiple minhashes together into a single hash. So, for example, instead of storing 200 minhashes per document, you might combine them in bands of four to yield 50 locality sensitive hashes.
The hash for each band is calculated from its constituent minhashes using a cheap hash function such as FNV-1a. This loses some information, which is why LSH is said to reduce the dimensionality of the data. The resulting hash is the bucket.
So the bucket for each band of minhashes within a document is calculated without requiring knowledge of any other bands or any other documents.
Using LSH hashes to find similar documents is simple: Let's say you want to find documents similar to document A. First generate the (e.g.) 50 LSH hashes for document A. Then look in your hash dictionary for all other documents that share one or more of these hashes. The more hashes they share, the higher their estimated jaccard similarity (though this is not a linear relationship, as it is when using plain minhashes).
The fewer total hashes stored per document, the greater the error in estimated jaccard similarity, and the greater the chance of missing similar documents.
Here's a good explanation of LSH.
QUESTION
Following https://calcite.apache.org/docs/tutorial.html, I ran Apache Calcite using SqlLine. I tried activating tracing as instructed in https://calcite.apache.org/docs/howto.html#tracing. However, I don't get any logging. Here is the content of my session (hopefully containing all relevant information):
...ANSWER
Answered 2019-Jun-18 at 08:29I have the impression that problem lies to the underlying implementation of the logger.
I am not an expert on logging configurations but I think specifying the properties file through -Djava.util.logging.config.file
does not have any effect since the logger that is used (according to the classpath you provided) is the Log4J implementation (slf4j-log4j12-1.7.25.jar
) and not the one of the jdk (https://mvnrepository.com/artifact/org.slf4j/slf4j-jdk14/1.7.26).
I think that the right property to use for the log4j implementation is the folowing:
-Dlog4j.configuration=file:C:\Users\user0\workspaces\apache-projects\apache-calcite\core\src\test\resources\log4j.properties
QUESTION
I am getting the error "Failed to submit supervisor: Request failed with status code 502" when I am trying to submit an ingestion spec to the druid UI (through the router). The ingestion spec works in a standalone druid server.
I have set up the cluster using 4 machines-1 for the coordinator and overlord (master), 1 for historical and middle manager (data), 1 for broker (query), and 1 for router, with a separate instance for zookeeper. There is no error in the logs.
The ingestion spec is as follows:
...ANSWER
Answered 2019-May-22 at 11:36It happened because the druid-kafka-indexing-service extension was missing from the extension list of common.runtime.properties.
QUESTION
I am working on duplicate documents detection problem using LSH algorithm. To handle large-scale data, we are using spark.
I have around 300K documents with at least 100-200 words per document. On spark cluster, these are the steps we are performing on data frame.
- Run Spark ML pipeline for converting text into tokens.
ANSWER
Answered 2019-Jan-16 at 08:39I don't think it might be possible to save python objects in DataFrames, but you can circumvent this in a couple of ways:
- Store the result instead of the object (not sure about how MinHash works, but if the value is numerical/string, it should be easy to extract it from the class object).
If that is not feasible because you still need some properties of the object, you might want to serialize it using Pickle, saving the serialized result as an encoded string. This forces you to de-serialize every time that you want to use the object.
final_df_limit.rdd.map(lambda x: base64.encodestring(pickle.dumps(CalculateMinHash(x),))).toDF()
An alternative might be to use the Spark MinHash implementation instead, but that might not suit all your requirements.
QUESTION
I'm running a Python script on a Sun Grid Engine supercompute cluster that reads in a list of file ids, sends each to a worker process for analysis, and writes one output per input file to disk.
The trouble is I'm getting IOError(110, 'Connection timed out') somewhere inside the worker function, and I'm not sure why. I've received this error in the past when making network requests that were severely delayed, but in this case the worker is only trying to read data from disk.
My question is: What would cause a Connection timed out error when reading from disk, and how can one resolve this error? Any help others can offer would be very appreciated.
Full script (the IOError crops up in minhash_text()
):
ANSWER
Answered 2018-May-22 at 02:00It turned out I was hammering the filesystem too hard, making too many concurrent read requests for files on the same server. That server could only allow a fixed number of reads in a given period, so any requests over that limit received a Connection Timed Out response.
The solution was to wrap each file read request in a while loop. Inside that while loop, try to read the appropriate file from disk. If the Connection timed out error springs, sleep for a second and try again. Only once the file has been read may the while loop be broken.
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Install datasketch
You can use datasketch like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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