impyute | Data imputations library to preprocess datasets | Data Visualization library
kandi X-RAY | impyute Summary
kandi X-RAY | impyute Summary
Data imputations library to preprocess datasets with missing data
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- Decorator to conform a function to a function
- Map a function on an array
- Decorator that turns a function into a function
- Execute a function with args and kwargs
- Returns a function that evaluates a constant
- Decorate a function to check inputs
- Return indices of nanans
- Check if the data array contains nan
- Minimization function
- Compute the mean of the data
- Decorate function to handle input data
- Get pandas dataframe
- Wrap a function in place
- Create a thread
- Get README rst rst rst rst rst
- Get the current python version
- Return MNIST dataset
- Decorator to add inplace option
- R Compute shepards
- Parse a requirements file
impyute Key Features
impyute Examples and Code Snippets
Lines of Code : 15License : Strong Copyleft (CC BY-SA 4.0)
Copydef fast_knn(data, k=3, eps=0, p=2, distance_upper_bound=np.inf, leafsize=10, **kwargs):
null_xy = find_null(data)
data_c = mean(data)
kdtree = KDTree(data_c, leafsize=leafsize)
for x_i, y_i in null_xy:
distancCommunity Discussions
Trending Discussions on impyute
QUESTION
I have used mice imputation to fill missing values of a machine learning dataset. The dataset is huge, 11726412 row and 30 columns. Here is the number of missing values in this data:
...ANSWER
Answered 2021-Apr-06 at 11:06According to the docs mice runs until convergence which is defined as less than 10% change between consecutive updates on all imputed values. This means that it is unpredictable when it will stop. My intuition would say that the probability of none of the imputation updates being smaller than 10% becomes very small with a large number of missing values.
Seeing that the source code is actually rather simple, you could write your own version that limits the number of iterations. It seems that one comment in the source actually indicates that this was the case for the original implementation at some point:
# Step 5: Repeat step 2 - 4 until convergence (the 100 is arbitrary)
You could replace the while all(converged): with for _ in range(max_iterations):.
QUESTION
I am working with a dataset of mixed categorical and numeric variables. There is lots of missing data and as such, I am hoping to do some imputation through classifiers. I am currently using fast_knn from impyute.imputation.cs. fast_knn is an easy to use function that fills in missing values with a kNN model.
My hope is to pass a numpy array into fast_knn that contains one hot encodings for the categorical variables, with np.nan in place for the values that are missing, mixed with the data from numeric attributes (also with np.nan in place for values that are missing).
The difficulty is making sure the missing values are apparent after converting categorical data to one hot encodings. How can I convert categorical data to one hot encodings such that missing values result in np.nan (as opposed to a one hot encoding)? I have been struggling with this for some time embarrassingly — I was under the impression that OneHotEncoder from scikit places 0-filled arrays for missing values, but I don't believe this is correct.
I would like to use a throwaway example. Suppose I had a dataset with three features, two categorical and one numeric. Here is an example of the final structure I would like. The first two features are categorical and the third is numeric:
...ANSWER
Answered 2021-Mar-31 at 14:43If you want to go with the one hot encoding approach, OneHotEncoder does indeed set a zero array for unknown values, consider for example
QUESTION
I want to make use of a promising NN I found at towardsdatascience for my case study.
The data shapes I have are:
...ANSWER
Answered 2020-Aug-17 at 18:14I cannot reproduce your error, check if the following code works for you:
QUESTION
running
...ANSWER
Answered 2020-Jun-25 at 00:08When you do this you can assign it back
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Install impyute
You can use impyute like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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