mayavi | 3D visualization of scientific data in Python | Data Visualization library
kandi X-RAY | mayavi Summary
kandi X-RAY | mayavi Summary
3D visualization of scientific data in Python
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Top functions reviewed by kandi - BETA
- Plot the camera view
- Returns the bounds of the outline
- Get an Engine instance
- Returns the camera direction of the camera
- Print usage message
- Decorate an animation function
- Save a scene
- Update the subdirectory
- Start recording
- Convert array to vtkCellArray
- Handle key press events
- Write the vtkDataArray to the vtk file
- Move the view
- Create the VTK control window
- Default actions
- Render Mlab examples
- Decorator that shows the given function
- Convert vtkArray to numpy array
- Run the program
- Update the volume
- Flips the normals of the STL file
- Calculate magnetic field
- Write the points to out
- Generate code
- Probes the data at the given coordinates
- Write the vtk object to the vtk file
mayavi Key Features
mayavi Examples and Code Snippets
Community Discussions
Trending Discussions on mayavi
QUESTION
I was searching for new visualization libraries in Python, and I learned about the existence of Pyvista. The examples I've seen look amazing.
I used to work with Mayavi a few years ago, but Pyvista seems very tempting. Are the features in Pyvista really as well-rounded as traditional libraries like Mayavi, etc.?
The question can seem opinion-based, but sometimes new libraries need a few years to become complete. I learned this the hard way with some CAD packages.
I intend to use Mayavi to post-process results from CFD simulations (computational fluid dynamics). Please let me know your opinions.
Thanks in advance,
...ANSWER
Answered 2021-Feb-18 at 01:35As PyVista is just a wrapper for VTK it's safe to say that you are not restricted in what is possible.
I found the move from Mayavi to Pyvista really straight forward. The library has a couple of functions that allows you to convert your existing data structure into VTK friendly structures quite easily. And if you were a fan of Mayavi's pipeline work there is something similar in PyVista where you can add on different things to do plotter.
I hope that helps. Also, join the slack channel if you want to ask any questions / see what other people are using it for.
QUESTION
working with Matplotlib I have produced some resistivity cross sections of the soil, obtaining pictures like this:
Now I would like to display all those sections in 3D so as to visualise better the spatial distribution of resistivity in the field (i.e. a so-called fence diagram). I would also like to plot the 2D map of the site where those measurements were carried out at the base of my plot (say on the XY plane). As far as I have seen this is not feasible (or at least not convenient) with Matplotlib in 3D hence I decided to switch to Mayavi. My questions are:
- is it feasible georeferenced rasters and then properly place them on the correct (vertical) planes (not necessarily parallel to the cartesian ones) with Mayavi? Does imshow() serves this purpose?
- is it better to recreate the contours in Mayavi at the proper locations? If this is the case I did not find a function to create contours from unstructured data (the input images were created with tricontour/tricontourf in Matplotlib). I do not think interpolating over a structured grid in scipy would do, given the non convex domain.
ANSWER
Answered 2020-Nov-16 at 17:11Ok, answering my own question:
QUESTION
I played a bit with Mayavi
and particularly with tvtk
but I struggle finding examples in which glyphs are placed on the scene at different orientation than default.
Based on this example I prepared the following scene with two cyllinders, one red and one blue,
...ANSWER
Answered 2020-Nov-05 at 10:30Ok, it turned out Actor
accepts orientation
argument which is in degrees (not in radians!). Also, the position of the actor has to be specified when actor is created and not when glyph is created!
QUESTION
I have generated a 3D graph network using the following code and Mayavi has been used for visualization.
...ANSWER
Answered 2020-Jul-19 at 13:11If you're ok with using vedo, which is built on top of vtk, this becomes easy:
QUESTION
I am trying to overlay a quiver3d
plot over an imshow
plot in mayavi
. The code I am using looks something like this:
ANSWER
Answered 2020-Jul-19 at 03:15OK, so the solution wound up being switching to nvidia graphics. I was running the code on a laptop with a GeForce GTX 1050 maxQ GPU and Intel on-board graphics. With on-board graphics (sudo prime-select intel
), I get the bug, when I switch to dedicated graphics (sudo prime-select nvidia
) I get the desired output.
QUESTION
On Fedora 31, I tried to install mayavi with pip
...ANSWER
Answered 2020-Jul-14 at 18:12I had this same issue on Ubuntu 20.04. I was not able not able to install from pypi. I had to get the source and install via git:
QUESTION
I want to run a batch file in a Conda environment, not in the base env, but in another virtual environment (here pylayers).
I copied the activate.bat
script from F:\Anaconda3\Scripts
to F:\Anaconda3\envs\pylayers\Scripts
.
And my batch script (installer_win.bat
) is:
ANSWER
Answered 2020-Jun-15 at 00:59To run a bat file from a dos prompt inside a new (non-base) conda env, you can try something like this:
prompt> cmd "/c activate ds_tensorflow && myfile.bat && deactivate"
contents of myfile.bat to show you are in the non-base env:
QUESTION
I'm trying to use mayavi in python to visualize a pointcloud, and cannot resolve this error. I'm sure it is an easy pip install, but I am unsure of the command. Any help is much appreciated! Thanks!
BTW, I am running Ubuntu 18.04 and have tried installing scipy as mentioned here: Python import error "getfullargspec". I have also ran pip install traitsui. Additionally, I have rebooted my system.
Update:
After further digging, it appears that it may be an issue with Python versions. I was able to get it to run with Python3, but not Python 2.7 (I need it to work with python 2). I have also tried modifying the code within handler.py to getargspec
instead of getfullargspec
. I was given an error about trait_factory by doing this
Here is the entire printout:
...ANSWER
Answered 2020-May-15 at 20:14The solution for this problem was to use older packages. Not all of the dependencies such as traitsui are compatible with Python 2.7. Even though an older version of mayavi was installed, the dependencies that are installed automatically are not compatible (they only support Python 3).
Here are the versions that work well together for me:
To install a specific version, just run sudo pip install packageName==#.#.#
QUESTION
I'm having some difficulty using Mayavi mlab in python with PyCharm IDE from the MNE-Python environment. I access the Conda environment with Mayavi and VTK over a VNC session using a xvnc server from my local MacOS to a Linux cluster machine.
The error I get when opening a mlab window is:
...ANSWER
Answered 2020-Apr-25 at 14:15I am unable to reproduce. Have you made sure that the machine you are accessing has available and loaded up-to-date graphics drivers and/or Mesa software? As an example, I am using TurboVNC to access a remote Ubuntu 18.04 machine, and I am able to produce the Spherical Harmonics Gallery Example both through the regular and envisage Mayavi backends. However, using the default settings of TurboVNC, the rendered scene has artefacts and saving the scene as png yields a black image, which I guess is a consequence of Mesa being used (llvmpipe). If I either start TurboVNC with -extension GLX
or if I simply prepend vglrun
to the python3
command, which calls VirtualGL, then OpenGL is used and the rendered scene is flawless. I attach the screenshot and saved figures below.
QUESTION
I'm plotting a 3D network using Mayavi,
...ANSWER
Answered 2020-Apr-27 at 13:19Is seems to me that you can't plot multiple tubes with different diameter at once. So one solution is to plot them one after another:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install mayavi
You can use mayavi like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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