pseudofinder | pseudogene candidates in bacterial and archaeal genomes | Data Labeling library

by filip-husnik Python Version: v1.0 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | pseudofinder Summary

pseudofinder is a Python library typically used in Artificial Intelligence, Data Labeling applications. pseudofinder has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However pseudofinder build file is not available. You can download it from GitHub.

Detection of pseudogene candidates in bacterial and archaeal genomes.

Support

Quality

Security

License

Reuse

Support

pseudofinder has a low active ecosystem.

It has 14 star(s) with 11 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 12 have been closed. On average issues are closed in 224 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pseudofinder is v1.0

Quality

pseudofinder has no bugs reported.

Security

pseudofinder has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

pseudofinder is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

pseudofinder releases are available to install and integrate.

pseudofinder has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed pseudofinder and discovered the below as its top functions. This is intended to give you an instant insight into pseudofinder implemented functionality, and help decide if they suit your requirements.

Run BLAST
Generate a Genome diagram
Read all contigs into a single SeqRecord
Return ribosome
Read a SeqRecord from a GFF file
Run reannotate py
Generate file dictionary
Calculate structural analysis
Convert genome to pandas graph
Get command line arguments
Creates a usage message for a given module
Unpack an arg group
Verify that arguments are valid
Prepare data for analysis
This function will create a reference to the Sleuth tags
Integrate an Intactual gff output file
Shuffle the given sequence
Parse blast file
Merge a single cds file
Extract intergenic regions from a genbank
Stops a stop sequence
Generate a dictionary of output file
Generate a subplot
Calculate the analysis statistics
Reads a GFF record from a GFF file
Create ribosome from a sequence
Generate a Seaborn plot
Helper function to create the Sleuth tags
Creates a diagram for the Genome
Write genotypes to GFF3 file
Convert a genome object to a pandas graph

Get all kandi verified functions for this library.

pseudofinder Key Features

No Key Features are available at this moment for pseudofinder.

pseudofinder Examples and Code Snippets

No Code Snippets are available at this moment for pseudofinder.

Community Discussions

Trending Discussions on Data Labeling

How can I do this split process in Python?

Replacing a character with a space and dividing the string into two words in R

Azure ML FileDataset registers, but cannot be accessed for Data Labeling project

QUESTION

How can I do this split process in Python?

Asked 2021-Dec-30 at 14:06

I'm trying to make a data labeling in a table, and I need to do it in such a way that, in each row, the index is repeated, however, that in each column there is another Enum class.

What I've done so far is make this representation with the same enumerator class.

A solution using the column separately as a list would also be possible. But what would be the best way to resolve this?

...

ANSWER

Answered 2021-Dec-30 at 13:57

Instead of using Enum you can use a dict mapping. You can avoid loops if you flatten your dataframe:

Source https://stackoverflow.com/questions/70532286

QUESTION

Replacing a character with a space and dividing the string into two words in R

Asked 2020-Nov-18 at 07:32

I have a dataframe that contains a column that includes strings separeted with semi-colons and it is followed by a space. But unfortunately in some of the strings there is a semi-colon that is not followed by a space.

In this case, This is what i'd like to do: If there is a space after the semi-colon we do not need a change. However if there are letters before and after the semi-colon, we should change semi-colon with space

i have this:

...

ANSWER

Answered 2020-Nov-16 at 07:24

Try something like:

Source https://stackoverflow.com/questions/64853962

QUESTION

Azure ML FileDataset registers, but cannot be accessed for Data Labeling project

Asked 2020-Oct-28 at 20:31

Objective: Generate a down-sampled FileDataset using random sampling from a larger FileDataset to be used in a Data Labeling project.

Details: I have a large FileDataset containing millions of images. Each filename contains details about the 'section' it was taken from. A section may contain thousands of images. I want to randomly select a specific number of sections and all the images associated with those sections. Then register the sample as a new dataset.

Please note that the code below is not a direct copy and paste as there are elements such as filepaths and variables that have been renamed for confidentiality reasons.

...

ANSWER

Answered 2020-Oct-27 at 22:39

Is the data behind virtual network by any chance?

Source https://stackoverflow.com/questions/64546521

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pseudofinder

This section will guide you through setting up Pseudofinder and its dependencies on your machine.
Easy installation requires python3 and Conda already installed. This will install pseudofinder into your $PATH and take care of all dependencies.
If you prefer to not use Conda, these are the dependencies that you must have to properly run Pseudofinder. Installation of python3, pip3, git (optional), and ncbi-blast+ on Ubuntu (as an administrator):. Installation of 3rd party python3 libraries on Ubuntu (as an administrator):. Clone the up to date pseudofinder.py code from github (no root access required):.