annie | annie ANNotation Information Extractor | Data Labeling library
kandi X-RAY | annie Summary
kandi X-RAY | annie Summary
This is Annie the Annotator~.
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Top functions reviewed by kandi - BETA
- Reads a SOFT file
- Given a FASTA file return a dictionary of gene names
- Get the mRNA info from a GFF file
- Given a blast file return a dictionary of reference IDs
- Read INI file
- Write annotation file
- Fix the given annotation
- Remove protein homolog lines from a line
- Removes the fragment from the annotation
- Remove extra whitespace from a line
- Remove kDaemon from an annotation
- Removes trailing hyphen hyphens
- Removes underscores from an annotation
- Removes whitespace from an annotation
annie Key Features
annie Examples and Code Snippets
Community Discussions
Trending Discussions on annie
QUESTION
This is a repost of a similar question I asked a few weeks back and I think I am able to do this but at significant (read: untenable) cost to my performance. There was a heroic poster at there who helped me somewhat and I am reposting at his/her direction. My code:
...ANSWER
Answered 2021-Jun-08 at 07:38Combining pandas groupby and sort_values methods will allow to run everything quite fast. The snippet below is an example implementation.
First generate ~100K rows of random data (this is a bit twisted but not relevant to your actual problem):
QUESTION
I have javascript to fetch json information. I will be storing this json file locally (I downloaded an example file and added birthdate object for my use example from https://jsonplaceholder.typicode.com/users)
I am trying to parse the returned JSON information and post the contents into 2 seperate div's. I have a json object named "birthdate". In my script, I have a var set to call today's date named "today". It prints the date as "05-12" in console, and that is how I have the "birthdate" formatted in JSON as well. I don't need the year or time.
What I would like is to have the script compare "today" with the json object "birthdate". If today = birthdate, then I would like to have that entry information displayed in the user-list-today div to appear under the Birthday Today section of the page.
If today does not equal birthdate, I would like to have all other entries displayed in the user-list-future div to appear under the Birthday Future section of the page.
Nothing should be posted in both areas, only one or the other.
Any help that anyone could provide would be greatly appreciated. I will include all of my code below. The snippet may give error because I have local path to JSON file instead of online version.
Here is my codepen of it codepen doesnt have the birthday JSON object https://codepen.io/abc-123-webguy/pen/poegaLq
...ANSWER
Answered 2021-May-12 at 21:47This is because you are appending the same node to two different divs. If you look at the documentation to appendChild here, you can see this:
QUESTION
I have a dataframe where in one column I have the following string-encoded list. I would like to create new data frame with few new columns from it, for example: Customer name, Cast_ID, Character.
...ANSWER
Answered 2021-May-04 at 12:01Assuming your variable is a string.
QUESTION
I have a sample like below:
...ANSWER
Answered 2021-Apr-19 at 23:01try the pandas melt function. Something like
pd.melt(df, id_vars = ['Name_1','Name_2'])
QUESTION
I'm trying to extract multiple Emails from string. I'm using this regex:
...ANSWER
Answered 2021-Apr-05 at 15:04You may use re.findall along with a list comprehension:
QUESTION
I want to selectively edit columns with the prefix grade. I only want to keep values for these columns where days is equal to "0 days" or "1 days". I want to assign the rest of the values as NA.
I have tried using mutate and ifelse, but can't get the combination quite right.
ANSWER
Answered 2021-Apr-01 at 13:37We can use across:
QUESTION
I need to store JSON file into RDS.
We have tried in My SQL but filtering based on JSON field or displaying JSON field from Mysql is not working.
Before moving to NOSQL which is turning out to be very costly for us wanted to check if Postgres is can handle this with good performance.
so for example lets say we have below value in table
...ANSWER
Answered 2021-Mar-19 at 15:47You can query for a specific country in different ways, and they will require different indexes to speed up the search (I am assuming that the column is define as jsonb)
You can create a GIN index on the whole JSON value:
QUESTION
This question is more about code organisation rather than an error/bug problem.
I am working on request body validation, json has structure like:
...ANSWER
Answered 2021-Mar-17 at 21:09the good practice here is that you are validating inputs ✅
the downside of your current approach is that it is hard to maintain long term ❌
you could go down the middleware way, and create multiple middlewares for each route/body that you need to validate. It works, but, the amount of work and maintenance burden will increase over time.
one approach you can follow is to create an expected schema of your input (e.g. a model definition describing the fields and values expected), and use a validator to check the current input based on the schema you created.
for Node.js we have multiple tools for that like: AJV, JOI, YUP.
using a sample example with JOI, you could replace your validation flow by doing:
QUESTION
I want to filter the rows that have the two same words from the dataframe.
The dataframe that I have look like:
...ANSWER
Answered 2021-Feb-21 at 20:22You can filter rows if there are tuples by compare if same length of sets and values of tuples - so removed rows with 2 or more duplicated words:
QUESTION
I have created a login system with php, mysql, and html. I am trying to figure out how to display a different home page with html code based on whether someone is logged in or not.
I have tried to display profile button on the header if they are logged in and if they are not logged in it displays Login/Signup on the header.
index.php
...ANSWER
Answered 2021-Feb-18 at 22:47The else was empty and the html version for users that are not logged in was always shown. By moving the closing else-bracket to the end of the file, you get the 2 versions depending on the user being logged in or not.
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Install annie
You can use annie like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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