gilda | biomedical named entities with contextual disambiguation | Natural Language Processing library

by indralab Python Version: 1.2.1 License: BSD-2-Clause

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | gilda Summary

gilda is a Python library typically used in Artificial Intelligence, Natural Language Processing, Bert applications. gilda has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install gilda' or download it from GitHub, PyPI.

Gilda is a Python package and REST service that grounds (i.e., finds appropriate identifiers in namespaces for) named entities in biomedical text.

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Quality

Security

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Support

gilda has a low active ecosystem.

It has 26 star(s) with 7 fork(s). There are 2 watchers for this library.

There were 1 major release(s) in the last 6 months.

There are 6 open issues and 16 have been closed. On average issues are closed in 50 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of gilda is 1.2.1

Quality

gilda has 0 bugs and 0 code smells.

Security

gilda has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

gilda code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

gilda is licensed under the BSD-2-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

gilda releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

It has 3797 lines of code, 226 functions and 37 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed gilda and discovered the below as its top functions. This is intended to give you an instant insight into gilda implemented functionality, and help decide if they suit your requirements.

Returns a pandas DataFrame containing the mapping tables
Get the synonym set for the given curies
Return the equivalence of a given curie
Return a list of ambiguousities
Get connection to db
Return a list of all Term objects
Add groundings to the model
Add grounding element
Get grounding for a given species
Build the database
Return a CORPus object
Return the score of the query combo
Filters the given blocks
Checks if a row exists in the paper
Dump an XML document to a file
View for a ground
Iterate over all terms in the database
Compute the results of the Gilda groundings
Get a CORPUS
Returns a set of names for the given database entry
Groundings with Gilda
Return a list of lines from a file
Resolve ambiguous mappings from mapping
Dump predictions as a table
Return a list of all possible terms
Make a dict of roman arabic patterns
Get mappings for GO IDs
Get mappings from ambigs

Get all kandi verified functions for this library.

gilda Key Features

No Key Features are available at this moment for gilda.

gilda Examples and Code Snippets

No Code Snippets are available at this moment for gilda.

Community Discussions

Trending Discussions on gilda

Sections from an array of objects

Constantly calculate the distance between my position and coordinates taken from a firebase realtime database?

SQL merge numerous rows into one single row using unique key

QUESTION

Sections from an array of objects

Asked 2022-Apr-01 at 23:13

I am trying to recreate this codepen with react and gsap on here and i have been trying to recreate this for about an hour now and do not even know where to start from, please who can help. i do not want to create the sections the same way in that codepen but rather form the details from an array of objects meaning creating just once component, i am fairly new to react and i would like know how to do something like that in react, looking at it from vanillajs perspective, i already know what is going on and i also created it like this in react but i want a situation where i have minimal code and the an array of objects forms one component making it more dynamic so i can click on it to get more information about each section that comes in. kindly assist Codepen link below https://codepen.io/designsbyharp/pen/jObpWZg

HTML

...

ANSWER

Answered 2022-Apr-01 at 23:13

If I'm understanding your question correctly you want a more DRY implementation so the slides are not explicitly written out in HTML/JSX.

Gather up the values that are different between each slide, i.e. the heading and image sources, into an array that can be mapped in the return.

Example:

Source https://stackoverflow.com/questions/71713138

QUESTION

Constantly calculate the distance between my position and coordinates taken from a firebase realtime database?

Asked 2022-Jan-20 at 14:59

In the application I am trying to create you can only join a guild if the guild leader is no more than 2km from my current position. I have a realtime database in which I have memorized the coordinates of the various leaders of the guilds. How do I calculate the distance between my position and the coordinates of the leader so that I can join the guild?

This is an image of my realtime database structure

I use an Interface for get the name of the guild and then the coordinates of the leader.

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ANSWER

Answered 2022-Jan-20 at 14:59

Since you have no way of knowing which happens first (loading from the database, or the location change listener), you'll have to check whether you have all data in both callbacks.

I recommend:

Creating two new fields in your activity class: one for the location fro the database, and one for the location from the phone itself.
Create a new method in the activity class (or elsewhere) that checks whether both location fields are set, and if they are within the range you care about.
Then call that new method from onDataChange and from onLocationChanged.

Source https://stackoverflow.com/questions/70786201

QUESTION

SQL merge numerous rows into one single row using unique key

Asked 2021-Jul-24 at 14:12

I have data that looks like this in my table (users) As you can see user_id 9 has filled numerous rows down with certain metadata. This user has 39 different meta_values recorded against their user_id over 39 rows.

user_id meta_key meta_value 9 first_name Gilda 9 last_name Lilia 9 Email test@test.com

I really want to transform the data so the output looks like this.

user_id first_name last_name 9 Gilda Lilia

and email, but I can't work out how to show it in the above table.

At this stage I have over 3600 unique users, and on average, there are about 40 rows per user. I want to be able to add different meta_values to the single row on and as needs basis, so really just looking for some help for the initial query.

Thank you very much for your assistance.

...

ANSWER

Answered 2021-Jul-24 at 11:16

Create a table in your database add 4 rows (as you want here, you can create as many as you wants)

Source https://stackoverflow.com/questions/68509176

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install gilda

Gilda is deployed as a web service at http://grounding.indra.bio/ (see Usage instructions below), however, it can also be used locally as a Python package. The recommended method to install Gilda is through PyPI as. Note that Gilda uses a single large resource file for grounding, which is automatically downloaded into the ~/.data/gilda/<version> folder during runtime (see pystow for options to configure the location of this folder). Given some additional dependencies, the grounding resource file can also be regenerated locally by running python -m gilda.generate_terms.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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