vasp | New ASE compliant Python interface to VASP | Dataset library
kandi X-RAY | vasp Summary
kandi X-RAY | vasp Summary
New ASE compliant Python interface to VASP
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Top functions reviewed by kandi - BETA
- Get the vibrational modes
- Returns a single document
- Returns a list of Atoms from the database
- Convert a MongoDB document to an ATOM object
- Get band structure
- Exit if condition is True
- Clone the directory to a new directory
- Set the recommended memory for the calculation
- Write POSCAR file
- Run qstat
- Run a qdel command
- Called when an exception is raised
- Return HTML representation of the results
- Run the Vasp
- Generate VASP file
- Wait for completion
- Get the Vibrational frequencies of the dynamical matrix
- Set ldau and ldauj
- Extracts a list of tensors from the vasprun xml files
- Get the elastic moduli
- Wrap vasp tryit
- Calculates the charges for the given atoms
- Generate a MongoDB document
- Get infrared intensities
- Reads the neb_calculator
- Write the molecule to a file
vasp Key Features
vasp Examples and Code Snippets
Community Discussions
Trending Discussions on vasp
QUESTION
I am just trying to learn to draw 3d objects with pyopengl
. The first thing I am trying to draw is the following code. The coordinates posat
, i.e. the positon of atom is supposed to be a bcc lattice, but I am far from getting anything like a cube. The output is added.
Kindly let me know what I am doing wring here:
ANSWER
Answered 2021-May-22 at 11:55glTranslate
defines a translation matrix and multiplies the current matrix with the new translation matrix. Hence all the translations are concatenated.
Use glPushMatrix
/glPopMatrx
to save the current matrix before specifying the translation and to restore the current matrix after drawing the atom:
QUESTION
I'm facing some issues while running pyiron jobs on my HPC via the pysqa adapter. I had accidentally erased the main pyiron
directory containing pyiron
, projects
and resources
folders. I had copied all the three from another cluster. The only thing that I think will cause problem is sqlite.db
file in the resources
folder. Previously, I had no issues running interactive VASP jobs through the adapter. I'm guessing something happened after the deletion incident.
The pyiron version I'm using is: 0.2.17
Here is a minimal example using an Interactive vasp job that I have tried:
...ANSWER
Answered 2020-Nov-23 at 14:37We updated the queuing system interface in pyiron 0.3.X you can read more about this here: https://pyiron.org/news/releases/2020/09/06/pyiron-0-3-X-HPC-release.html
For pyiron 0.3.X we have a detailed installation guide available on readthedocs.org: https://pyiron.readthedocs.io/en/latest/source/installation.html#remote-hpc-cluster
So I highly recommend updating to pyiron 0.3.13.
Apart from this the error message basically says that the submission was not successful. If you navigate to the jobs working directory job.working_directory
you should find a run_queue.sh
script in the working directory. This is the script pyiron is using to submit the job to the queuing system. You can try to submit it manually using sbatch run_queue.sh
this should print the queue id if successful and otherwise the error message from your queuing system.
QUESTION
I want to execute the VASPKIT program by using a shell script.
In the terminal, I can call the program by typing 'vaspkit'
...ANSWER
Answered 2020-Sep-05 at 18:54Text in a script is interpreted as if it's commands, not as keyboard input. So, it will require automating the input somehow. One simple way is using a here-string:
QUESTION
I have the below file named ABCD.vasp
:
ANSWER
Answered 2020-Jun-24 at 16:38Don't call awk multiple times just write to multiple output files for each line inside awk, like this:
QUESTION
I have the below file named ABCD.vasp
:
ANSWER
Answered 2020-Jun-24 at 13:57You may use this awk
:
QUESTION
I am developing an Android app The App fetches the data from Firebase using FirebaseRecyclerAdapter
and I need to implement a ProgressBar
in that Recyler View
.
How to add RrogressBar in RecyclerView before the data is loaded..and after the data is loaded the loading screen need to be Dismiss
code:
...ANSWER
Answered 2019-Aug-15 at 09:36Because you are using FirebaseRecyclerAdapter
, you can override the onDataChanged()
method in your adapter class. So create a new object of ProgressBar
and start showing it in the onCreate()
method, or if you want, you can add it directly in your .XML file. Finally in your adapter class, use the following lines of code:
QUESTION
I have a job information file which is named tmpInfo.txt in my project. The content of tmpInfo.txt is like:
...ANSWER
Answered 2019-Jun-06 at 01:56You need to do 2 major changes in your code. 1st change =~
(it is used in shell and awk
is not shell) to ~/string/
then I am considering that gaussion
is a text you want to print in output so wrap it too in "gaussion"
same applies to other texts too.
Try following once.
QUESTION
I'm trying to create a script that creates scripts (and do other things). My problem is that these scripts created contain environment variables, and when actually running my script, they do not appear in the script.
...ANSWER
Answered 2017-Aug-04 at 20:05Quote your heredoc sigil to prevent expansions from taking place inside the contents:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install vasp
You can use vasp like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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