bowtie | : bowtie : Create a dashboard with python | Data Visualization library

I am very new to coding so I'm not really sure how to approach this. I wanted to look at some data that we got and sequence them using Bismark. I already used Trim Galore to pare the reads, now I wanted to get the data into Bismark. However, I'm not exactly sure how to approach this. In the documentation it said that it required Perl to run so I downloaded Perl along with the Bismark zip file from github. I also downloaded the bowtie2 zip file and extracted both the zip files into the same directory. I then opened up the Perl command prompt and set the directory to one with my extracted folders. I put this line in:

Code written in java

I'm trying to print the user's input amount of "*" on the same line.

Here is what I have:

I have two dataframe as below:

I am writing a code to create a new sheet with a user defined name and code name. Then add multiple shapes with user defined text inside the shapes in new sheet vertically down. The number of shapes will be based on number of cells selected by user in the 1st sheet. When I try run the written code for adding shapes in new sheet "Run time error '438' Object does not support this property or method" pops up. I tried running the same code with existing sheet and it runs fine. Can someone help identify the error and provide solution?

PS: I'm not coder so little layman language solution would help. The code is attached and debugging line is Set S = BN.Shapes.AddShape(msoShapeRectangle, 20, a, 200, 100). The existing sheet codename is "Tool" and the new sheet codename which will be added is based on user input defined with variable BN.

I have a Python server app running in a Python:alpine container. The server app makes use of different biological pipelines such as BLAST or Bowtie and others (all applications on their own without networking functionality).

Would it be better to install the third-party software in the Python:alpine container of the server app, or to have separate containers for each app? I think the second one would make more sense.

However, if I now have 3+ containers with my server app, BLAST, Bowtie, etc., how do I access these third-party apps from my server app?

Another advantage of having multiple containers would be that images exist on Docker hub for all the apps my server app requires.

To be clear, it is not about sharing data between containers (e.g. volumes, binds), but to make direct calls to apps in other containers.

In Snakemake, conda environments can be easily set up by defining rules as such conda: "envs/my_environment.yaml". This way, YAML files specify which packages to install prior to running the pipeline.

Some software requires a path to third-party-software, to execute specific commands.

An example of this is when generating a reference index with RSEM (example from GitHub page DeweyLab - RSEM):

I have a list ('dummy"). I want to extract ONLY the values related to the best 'Score'. For example, from the list I should have the following values extracted:

This question is related to this other one: How can I read data from a list and index specific values into Elasticsearch, using python?

I have written a script to read a list ("dummy") and index it into Elasticsearch. I converted the list into a list of dictionaries and used the "Bulk" API to index it into Elasticsearch. The script used to work (check the attached link to the related question). But it is no longer working after adding "timestamp" and the function "initialize_elasticsearch".

So, what is wrong? Should I be using JSON instead of the list of dictionaries?

I have also tried using only 1 dictionary of the list. In that case there is no error but nothing gets indexed.

THIS IS THE ERROR

THIS IS THE LIST (dummy)

I have a list (see LIST) that I want to send to a dictionary.

But I do not want to send all the data. Just some values (see SOME VALUES/FEATURES) which happen to repeat many times. For example, the word "Model: xxx" appears like 7 times. "xxx" is the name of the model and it will change.

So far I can only put in the dictionary the last values of the list. How can I put all the values from the list into the dictionary?

SOME VALUES:

Labels: xxxx

Model: xxxx

Image: xxxx

Inference: xxxx

Score: xxxx

TPU_temp(°C): xxxx

Time(ms): xxx ---There are 2 of these, I do not know if it is possible to extract ONLY the second one. But if not, no problem. Extracting both will be fine.--

THIS IS THE CODE - ATTEMPT 1