NegBio | performance tool for negation and uncertainty | Natural Language Processing library

by ncbi-nlp Python Version: v0.9.4 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | NegBio Summary

NegBio is a Python library typically used in Artificial Intelligence, Natural Language Processing applications. NegBio has no bugs, it has no vulnerabilities, it has build file available and it has low support. However NegBio has a Non-SPDX License. You can download it from GitHub.

:newspaper: High-performance tool for negation and uncertainty detection in radiology reports

Support

Quality

Security

License

Reuse

Support

NegBio has a low active ecosystem.

It has 121 star(s) with 32 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 4 open issues and 20 have been closed. On average issues are closed in 133 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of NegBio is v0.9.4

Quality

NegBio has 0 bugs and 79 code smells.

Security

NegBio has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

NegBio code analysis shows 0 unresolved vulnerabilities.

There are 4 security hotspots that need review.

License

NegBio has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

NegBio releases are available to install and integrate.

Build file is available. You can build the component from source.

NegBio saves you 938 person hours of effort in developing the same functionality from scratch.

It has 2140 lines of code, 167 functions and 58 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed NegBio and discovered the below as its top functions. This is intended to give you an instant insight into NegBio implemented functionality, and help decide if they suit your requirements.

Extract mentions
Return the node with the given name
Check if a sentence overlaps with the given annotation
Add a Match annotation
Run a metamap
Adapts a concept index
Return the node with the given index
Aggregate mentions
Convert a dictionary into a vector
R Parse sub - node
Detect the dependency graph
Convert text files to Bioclections
Extend the annotation with the given type
Load observation phrase
Read requirements from requirements txt file
Reads the cuis file
Parse command line arguments
Runs extractor
Normalize passage text
Run a given detector
Run the metamap
Scans the given document using the given fn
Scans a collection of files
Create a NetworkX DiGraph from a sentence
Detect dependencies
Process a collection of documents

Get all kandi verified functions for this library.

NegBio Key Features

No Key Features are available at this moment for NegBio.

NegBio Examples and Code Snippets

No Code Snippets are available at this moment for NegBio.

Community Discussions

Trending Discussions on NegBio

Why am I getting ModuleNotFoundError after installing Negbio?

QUESTION

Why am I getting ModuleNotFoundError after installing Negbio?

Asked 2021-Apr-28 at 20:17

Building a docker image, I've installed Negbio in my Dockerfile using:

...

ANSWER

Answered 2021-Apr-26 at 11:00

As per your comment, It wouldn't install with pip and hence not installing via pip.

Firstly, to make sure the https://github.com/ncbi-nlp/NegBio is properly installed via python setup.py install, you need to install it's dependencies via pip install -r requirements first. So either ways, you are doomed to have pip inside Docker.

For example, this is the sample Dockerfile that would install the negbio package properly:

Source https://stackoverflow.com/questions/67127453

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install NegBio

You can download it from GitHub.
You can use NegBio like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: