scRNA | Python framework for single-cell RNA | Data Manipulation library

by nicococo Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | scRNA Summary

scRNA is a Python library typically used in Utilities, Data Manipulation, Numpy applications. scRNA has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

scRNA - Transfer learning for clustering single-cell RNA-Seq data.

Support

Quality

Security

License

Reuse

Support

scRNA has a low active ecosystem.

It has 15 star(s) with 3 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 4 open issues and 10 have been closed. On average issues are closed in 6 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of scRNA is current.

Quality

scRNA has no bugs reported.

Security

scRNA has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

scRNA is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

scRNA releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed scRNA and discovered the below as its top functions. This is intended to give you an instant insight into scRNA implemented functionality, and help decide if they suit your requirements.

Generate toy experiment data
Generate counts for each cluster
Generates a Dirichlet generator
Generate counts data
Get mixed data
Apply pre processing
Calculate rejection error
Splits source and target genes
Flattens a nested list
Estimate the unsupervised confidence intervals
Log 2
Cell filter
Plot a TSNE
Filtering gene filter
Flattens a list of lists
Compute the NMF distribution
Compute the cluster clustering
Build consensus matrix
Calculates the unsupervised association matrix
Compute the MNF model
Load dataset from TSV file
Run preprocessing
Plot percsopt
Compute the k - factorization
Calculate the distance between two genes
Constructs a label matrix based on kurts

Get all kandi verified functions for this library.

scRNA Key Features

No Key Features are available at this moment for scRNA.

scRNA Examples and Code Snippets

No Code Snippets are available at this moment for scRNA.

Community Discussions

Trending Discussions on scRNA

Unable to install 'Velocyto.R' from Github

Regex to match multiple words separated by commas and quotation marks

QUESTION

Unable to install 'Velocyto.R' from Github

Asked 2020-Jun-08 at 07:39

I am a beginner in R trying to analyze my scRNA-seq data with velocyto.R in R studio. Following velocyto tutorial, I tried installing velocyto.R as below:

...

ANSWER

Answered 2020-Jun-08 at 07:39

As your error log says C:/..., you probably use Windows. According to velocyto's README it seems that this package runs only on unix-flavored systems with C++11, Open MP, boost, igraph and hdf5c++ libraries.

This can be the problem: read the velocyto's GitHub issue #40, maybe you'll need to run this under WSL...?

Source https://stackoverflow.com/questions/62256191

QUESTION

Regex to match multiple words separated by commas and quotation marks

Asked 2018-Feb-04 at 23:49

Test string: tags = ["#scRNA-seq", "#single_cell", "#NGS", "#single_cell:method"]

Goal: Remove brackets, quotes and commas.

Desired output:

tags = #scRNA-seq #single_cell #NGS #single_cell:method

My attempt: https://regex101.com/r/b18o27/1

I can match the first term, but I don't know how to match every single term.

...

ANSWER

Answered 2018-Feb-04 at 23:49

Just strip the unwanted characters to clean your string. This is much easier than capturing the whole structure and detecting the correct parts to keep within it.

Regular Expression

Source https://stackoverflow.com/questions/48613977

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install scRNA

You can download it from GitHub.
You can use scRNA like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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