anomaly-detection | Anomaly detection is a common problem | Predictive Analytics library

 by   numancelik34 Python Version: Current License: No License

kandi X-RAY | anomaly-detection Summary

kandi X-RAY | anomaly-detection Summary

anomaly-detection is a Python library typically used in Analytics, Predictive Analytics, Deep Learning, Pytorch, Tensorflow, Keras, Neural Network applications. anomaly-detection has no bugs, it has no vulnerabilities and it has low support. However anomaly-detection build file is not available. You can download it from GitHub.

Anomaly detection is a common problem that is applied to machine learning/deep learning research. Here we will apply an LSTM autoencoder (AE) to identify ECG anomaly detections. In our experiments, anomaly detection problem is a rare-event classification problem. Therefore we will train our LSTM AE with major class, then we would have a higher mean squared error when model sees a minor class in the dataset. The proposed LSTM autoencoder model was trained on ECG signal sequences those obtained from MIT database normal patients. The data files are under the training folder in this repository. Then the model was evauated on random data files that includes ECG signal sequences and the mean squared errors are calculated as loss functions after reconstructing the ECG signals. In the LSTM_AE.py file, we are attempting to identify a rare event classification problem in the given outfinaltest62.csv file where class '0' is a minor class in the dataset.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              anomaly-detection has a low active ecosystem.
              It has 5 star(s) with 2 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of anomaly-detection is current.

            kandi-Quality Quality

              anomaly-detection has no bugs reported.

            kandi-Security Security

              anomaly-detection has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              anomaly-detection does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              anomaly-detection releases are not available. You will need to build from source code and install.
              anomaly-detection has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed anomaly-detection and discovered the below as its top functions. This is intended to give you an instant insight into anomaly-detection implemented functionality, and help decide if they suit your requirements.
            • Shift a dataframe by a given shift .
            • Scale X .
            • Flattens X features .
            • Temporalize the data into temporal series .
            Get all kandi verified functions for this library.

            anomaly-detection Key Features

            No Key Features are available at this moment for anomaly-detection.

            anomaly-detection Examples and Code Snippets

            No Code Snippets are available at this moment for anomaly-detection.

            Community Discussions

            QUESTION

            Time series decomposition and graphing from custom metrics in Azure Logs
            Asked 2021-Apr-19 at 07:02

            While learning Azure Log processing I started recording simple queue counts as metrics via AppInsight. Currently I process them in a fairly simple way and show them in a same graph.

            The simple query is like

            ...

            ANSWER

            Answered 2021-Apr-19 at 07:02
            1. If you have both the actual counts and the forecast in the table then 'render timechart shows both. Note that you need to specify to max_t+horizon in make-series.

            Source https://stackoverflow.com/questions/67072627

            QUESTION

            Automatically Exporting PowerBi Visualisation Data?
            Asked 2021-Apr-19 at 04:32

            I need to automatically extract raw data of a PowerBI visualisation across multiple published reports.

            Why not just pull the underlying dataset? Because the visualisations are using anomaly detection features of PowerBI, which include anomaly flags not available in the underlying dataset (basically, the visualisations contain calculated columns that are not included in main PowerBI data model)

            Ideally a REST API solution would be best, but dumping CSV files or other more roundabout methods are ok.

            So far, the closest functionality I can see is in the Javascript API here - https://docs.microsoft.com/en-us/javascript/api/overview/powerbi/export-data, which allows a website to communicate with an embedded PowerBI report and pass in and out information. But this doesn't seem to match my implementation needs.

            I have also seen this https://docs.microsoft.com/en-us/azure/cognitive-services/anomaly-detector/tutorials/batch-anomaly-detection-powerbi which is to manually implement anomaly detection via Azure Services rather than the native PowerBI functionality, however this means abandoning the simplicity of the PowerBI anomaly function that is so attractive in the first place.

            I have also seen this StackOverflow question here PowerBI Report Export in csv format via Rest API and it mentions using XMLA endpoints, however it doesn't seem like the client applications have the functionality to connect to visualisations - for example I tried DAX Studio and it doesn't seem to have any ability to query the data on a visualisation level.

            ...

            ANSWER

            Answered 2021-Apr-19 at 04:32

            I'm afraid all information on PowerBI says this is not possible. The API only supports PDF, PPTX and PNG options, and as such the integration with Power Automate doesn't do any better.

            The StackOverflow question you link has some information on retrieving the Dataset but that's before the anomaly detection has processed the data.

            I'm afraid your best bet is to, indeed, use the Azure service. I'd suggest ditching PowerBI and going to an ETL tool like DataFactory or even into the AzureML propositions Microsoft offers. You'll be more flexible than in PowerBI as well since you'll have the full power of Python/R notebooks at your disposal.

            Sorry I can't give you a better answer.

            Source https://stackoverflow.com/questions/66665680

            QUESTION

            Why is the loss of my autoencoder not going down at all during training?
            Asked 2021-Apr-05 at 15:32

            I am following this tutorial to create a Keras-based autoencoder, but using my own data. That dataset includes about 20k training and about 4k validation images. All of them are very similar, all show the very same object. I haven't modified the Keras model layout from the tutorial, only changed the input size, since I used 300x300 images. So my model looks like this:

            ...

            ANSWER

            Answered 2021-Apr-05 at 15:32

            It could be that the decay_rate argument in tf.keras.optimizers.schedules.ExponentialDecay is decaying your learning rate quicker than you think it is, effectively making your learning rate zero.

            Source https://stackoverflow.com/questions/66932872

            QUESTION

            How to train a Keras autoencoder with custom dataset?
            Asked 2021-Mar-30 at 15:25

            I am reading this tutorial in order to create my own autoencoder based on Keras. I followed the tutorial step by step, the only difference is that I want to train the model using my own images data set. So I changed/added the following code:

            ...

            ANSWER

            Answered 2021-Mar-30 at 15:25

            Use class_mode="input" at the flow_from_directory so returned Y will be same as X

            https://github.com/tensorflow/tensorflow/blob/v2.4.1/tensorflow/python/keras/preprocessing/image.py#L867-L958

            class_mode: One of "categorical", "binary", "sparse", "input", or None. Default: "categorical". Determines the type of label arrays that are returned: - "categorical" will be 2D one-hot encoded labels, - "binary" will be 1D binary labels, "sparse" will be 1D integer labels, - "input" will be images identical to input images (mainly used to work with autoencoders). - If None, no labels are returned (the generator will only yield batches of image data, which is useful to use with model.predict()). Please note that in case of class_mode None, the data still needs to reside in a subdirectory of directory for it to work correctly.

            Code should end up like:

            Source https://stackoverflow.com/questions/66873097

            QUESTION

            How to determine number of neighbors in knn in pycaret
            Asked 2021-Jan-06 at 03:17

            My question lies specifically in knn method in Anomaly Detection module of pycaret library. Usually number of k neighbors has to be specified. Like for example in PyOD library.

            How to learn what number of neighbors knn uses in pycaret library? Or does it have a default value?

            ...

            ANSWER

            Answered 2021-Jan-06 at 03:17

            you can find the number of neighbors of the constructed knn model by printing it. By default, n_neighbors=5, radius=1.0.
            I run the knn demo code locally, with:

            Source https://stackoverflow.com/questions/65588010

            QUESTION

            Error: Error time_decompose(): when perform Anomaly Detection in R
            Asked 2020-Dec-22 at 19:44

            Here mydata

            ...

            ANSWER

            Answered 2020-Dec-22 at 19:44

            The time_decompose() function requires data in the form of:

            A tibble or tbl_time object

            (from ?time_decompose)

            Perhaps zem is a data.frame? You can include as_tibble() in the pipe to make sure it is a tibble ahead of time.

            In addition, it expects to work on time based data:

            It is designed to work with time-based data, and as such must have a column that contains date or datetime information.

            I added to your test data a column with dates. Here is a working example:

            Source https://stackoverflow.com/questions/65411085

            QUESTION

            Difference between these implementations of LSTM Autoencoder?
            Asked 2020-Dec-08 at 15:43

            Specifically what spurred this question is the return_sequence argument of TensorFlow's version of an LSTM layer.

            The docs say:

            Boolean. Whether to return the last output. in the output sequence, or the full sequence. Default: False.

            I've seen some implementations, especially autoencoders that use this argument to strip everything but the last element in the output sequence as the output of the 'encoder' half of the autoencoder.

            Below are three different implementations. I'd like to understand the reasons behind the differences, as the seem like very large differences but all call themselves the same thing.

            Example 1 (TensorFlow):

            This implementation strips away all outputs of the LSTM except the last element of the sequence, and then repeats that element some number of times to reconstruct the sequence:

            ...

            ANSWER

            Answered 2020-Dec-08 at 15:43

            There is no official or correct way of designing the architecture of an LSTM based autoencoder... The only specifics the name provides is that the model should be an Autoencoder and that it should use an LSTM layer somewhere.

            The implementations you found are each different and unique on their own even though they could be used for the same task.

            Let's describe them:

            • TF implementation:

              • It assumes the input has only one channel, meaning that each element in the sequence is just a number and that this is already preprocessed.
              • The default behaviour of the LSTM layer in Keras/TF is to output only the last output of the LSTM, you could set it to output all the output steps with the return_sequences parameter.
              • In this case the input data has been shrank to (batch_size, LSTM_units)
              • Consider that the last output of an LSTM is of course a function of the previous outputs (specifically if it is a stateful LSTM)
              • It applies a Dense(1) in the last layer in order to get the same shape as the input.
            • PyTorch 1:

              • They apply an embedding to the input before it is fed to the LSTM.
              • This is standard practice and it helps for example to transform each input element to a vector form (see word2vec for example where in a text sequence, each word that isn't a vector is mapped into a vector space). It is only a preprocessing step so that the data has a more meaningful form.
              • This does not defeat the idea of the LSTM autoencoder, because the embedding is applied independently to each element of the input sequence, so it is not encoded when it enters the LSTM layer.
            • PyTorch 2:

              • In this case the input shape is not (seq_len, 1) as in the first TF example, so the decoder doesn't need a dense after. The author used a number of units in the LSTM layer equal to the input shape.

            In the end you choose the architecture of your model depending on the data you want to train on, specifically: the nature (text, audio, images), the input shape, the amount of data you have and so on...

            Source https://stackoverflow.com/questions/65188556

            QUESTION

            Run a crawler using CloudFormation template
            Asked 2020-Oct-11 at 09:29

            This CloudFormation template works as expected and creates all the resources required by this article:

            Data visualization and anomaly detection using Amazon Athena and Pandas from Amazon SageMaker | AWS Machine Learning Blog

            But the WorkflowStartTrigger resource does not actually run the crawler. How do I run a crawler using the CloudFormation template?

            ...

            ANSWER

            Answered 2020-Oct-11 at 09:29

            You should be able to do that by creating a custom resource attached to a lambda whereby the lambda actually does the action of starting the crawler. You should be able to even make it wait for the crawler to complete its execution

            Source https://stackoverflow.com/questions/64300994

            QUESTION

            Unable to read env variables when running a python code via shell script
            Asked 2020-Aug-12 at 11:24

            I have a python script that I am hosting in an EC2 instance (using CI, CodeDeploy, CodePipeline). In the code, I am taking the path of the DB as env variable as follows:

            ...

            ANSWER

            Answered 2020-Aug-12 at 11:19

            You must install python-dotenv

            You can do that with this command:

            Source https://stackoverflow.com/questions/63375287

            QUESTION

            How to transfer deployment package from S3 to EC2 instance to run python script?
            Asked 2020-Jul-22 at 11:10

            AWS beginner here

            I have a repo in GitLab which has a python script and a requirements.txt file, and the python script has to be deployed in the EC2 ubuntu instance (and the script has to be triggered only once a day) via Gitlab CI. I am creating a deployment package of the repo using CI and through this, I am deploying the zipped package in the S3 bucket. My .gitlab-ci.yml file:

            ...

            ANSWER

            Answered 2020-Jul-22 at 11:10

            The link you've posted already shows one way of doing this. Namely, by using UserData.

            Therefore, you would have to develop a bash script which would not only download the zip file as shown in the link, but also unpack it, and install the requirements.txt file along side with any other dependencies or configuration setup you require.

            So the UserData for your instance would be something like this (pseudo-code, this is only a rough example):

            Source https://stackoverflow.com/questions/63031417

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install anomaly-detection

            You can download it from GitHub.
            You can use anomaly-detection like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/numancelik34/anomaly-detection.git

          • CLI

            gh repo clone numancelik34/anomaly-detection

          • sshUrl

            git@github.com:numancelik34/anomaly-detection.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link