pbs | A python package for submitting and managing PBS jobs | Build Tool library

 by   prisms-center Python Version: v2.0.0 License: Non-SPDX

kandi X-RAY | pbs Summary

kandi X-RAY | pbs Summary

pbs is a Python library typically used in Utilities, Build Tool, Numpy, Pandas, Example Codes applications. pbs has no bugs, it has no vulnerabilities and it has high support. However pbs build file is not available and it has a Non-SPDX License. You can download it from GitHub.

When submitted through this package or the included scripts, PBS jobs are stored in a SQLite jobs database. This allows for convenient monitoring and searching of submitted jobs. Jobs marked as auto can be automatically or easily re-submitted until they reach completion. Jobs are marked auto either by submitting through the python class pbs.Job with the attribute ``auto=True``, or by submitting a PBS script which contains the line ``#auto=True`` using the included psub script. Jobs can be monitored using pstat, which is similar to qstat. All auto jobs which have stopped can be resubmitted using ``pstat --continue``. Additionally, when scheduling periodic jobs is not allowed other ways, the taskmaster script can fully automate this process. taskmaster executes ``pstat --continue`` and then re-submits itself to execute again periodically. A script marked auto should check itself for completion and when reached execute ``pstat --continue $PBS_JOBID`` in bash, or ``pbs.complete_job()`` in python. If an auto job script does not set it’s taskstatus to "Complete" it may continue to be re-submitted over and over. Jobs not marked auto are shown with the status "Check" in pstat until the user marks them as "Complete".
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            kandi-support Support

              pbs has a highly active ecosystem.
              It has 25 star(s) with 19 fork(s). There are 14 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 4 open issues and 2 have been closed. On average issues are closed in 126 days. There are no pull requests.
              OutlinedDot
              It has a negative sentiment in the developer community.
              The latest version of pbs is v2.0.0

            kandi-Quality Quality

              pbs has 0 bugs and 0 code smells.

            kandi-Security Security

              pbs has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              pbs code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              pbs has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              pbs releases are available to install and integrate.
              pbs has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions, examples and code snippets are available.
              pbs saves you 623 person hours of effort in developing the same functionality from scratch.
              It has 1449 lines of code, 90 functions and 9 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed pbs and discovered the below as its top functions. This is intended to give you an instant insight into pbs implemented functionality, and help decide if they suit your requirements.
            • Read configuration from a string .
            • Return the status of a job .
            • Squeue the given jobid
            • Connect to the database .
            • Run qstat using qselect
            • Return a dictionary of the job status .
            • Create a flux project .
            • Creates a flux project .
            • Creates a Job object .
            • Create a JobDebugJob object .
            Get all kandi verified functions for this library.

            pbs Key Features

            No Key Features are available at this moment for pbs.

            pbs Examples and Code Snippets

            No Code Snippets are available at this moment for pbs.

            Community Discussions

            QUESTION

            Displaying an image after clicking 100 times on a button
            Asked 2021-May-28 at 18:25

            I'm new here and I still have some difficulties in coding. I'm trying to create an html page for some friends and I managed to create a click counter, an image which appear and disapear after some time etc

            However the only thing that I can't manage to do is how I can make an image appear after clicking on the button for 100 or 1000 times. I can make the image appear after clicking on the button one time, but I don't know how to make it appear only after some clicking.

            If someone can help me I'll be very glad!

            ...

            ANSWER

            Answered 2021-May-28 at 18:25

            You just need to add an if statement, checking if the innerHTML is more or equal to 100, and then call showImage().

            I removed code that wasn't relevant.

            I added declarations to the variables by adding let in front the name.

            I removed the button, and put an event listener directly on the image instead.

            I think the rest of the code is self-explanatory.

            Source https://stackoverflow.com/questions/67743625

            QUESTION

            PostgreSQL invalid input syntax for type json The input string ended unexpectedly
            Asked 2021-May-24 at 06:21

            As I'm trying to import JSON file on PostgreSQL pgadmin, I wrote following script, but it didn't work with the error shown below, for some reason.

            The sql/plpgsql:

            ...

            ANSWER

            Answered 2021-May-24 at 03:00

            After some tryings, as @jjanes mentioned, I found the cause of this problem, it was beucase an empty line in the end of the json file (tmp03.json).

            As I copy and pasted to the file using "cat > file" and I inadvertently pressed one unnecessary enter key in the end of the lines, it resulted creating a empty line in the end of the json file. So, this line caused the error. sigh..

            Here some extra tryings I made for further understanding around this issue.

            • tmp05.json, lines of json with removed last "empty" new line

            worked

            • tmp03.json, lines of json with an empty line in the last (the question mentioned error)

            Source https://stackoverflow.com/questions/67665557

            QUESTION

            Body is only going about halfway down page causing my footer to display in about the middle of the page
            Asked 2021-May-24 at 00:52

            Im not sure why but I cant seem to get this footer to go properly to the bottom, my body seems to only be going halfway up the page? I wrapped the whole thing in main to see if that would fix it if I set a height on that, it seemingly only goes the same height every single time. Its like its not catching the viewport or something and causing it to only go about half way up. Also please be easy im a new coder so if your awnser has just general advice to improve im all about it. Thanks ahead of time!

            ...

            ANSWER

            Answered 2021-May-24 at 00:16

            The line max-height: 100vh in #tribute-info is the cause of this. If you remove it, the footer will display correctly at the bottom.

            In addition, the

            tag is meant to be part of the , not between and .

            Source https://stackoverflow.com/questions/67665368

            QUESTION

            Unravel list within list
            Asked 2021-May-14 at 21:09

            I have a jupyter notebook, containing a pandas dataframe, with a column PAR (dtype = obj).

            ...

            ANSWER

            Answered 2021-May-14 at 21:09

            QUESTION

            Read Nested JSON Data in DStrem in pyspark
            Asked 2021-May-08 at 16:54

            I have written following code to stream data from Tweepy API. And I am getting data inside stream object. But unable to get streamp["user"]["followers_count"] but don't know how to get it. I also tried jsonLines = lines.flatMap(lambda json_str:json.loads(json_str)) but no help.

            ...

            ANSWER

            Answered 2021-May-08 at 16:54

            You can map the json string to a tuple of the values that you want to extract:

            Source https://stackoverflow.com/questions/67446265

            QUESTION

            tweepy: how to check for alt_text
            Asked 2021-Apr-22 at 14:57

            I need to check if a given tweet contains or not alt_text.

            I'm trying with API.get_status operation, which, according to its documentation contains a parameter to include alt_text:

            include_ext_alt_text – If alt text has been added to any attached media entities, this parameter will return an ext_alt_text value in the top-level key for the media entity.

            However, all I get is:

            ...

            ANSWER

            Answered 2021-Apr-22 at 14:57

            Well, after debugging a little with pycharm, I found that alt_text is available in status.extended_entities['media'][0]['ext_alt_text'], where status = api.get_status('1373498941732454402', include_ext_alt_text=True).

            This can be None when no alt_text is present, and extended_entities migth not be available, so before accessing check if it does exists.

            UPDATE In adition to this, for compatibility reasons, some tweets that actually contain images may not contain this atribute, so to make sure, the API call need an extra parameter with respect to the mode:

            Source https://stackoverflow.com/questions/67041809

            QUESTION

            Dask: handling unresponsive workers
            Asked 2021-Apr-15 at 14:54

            When using Dask with SGE or PBS clusters I sometimes have workers becoming unresponsive.
            These workers are highlighted in red in the dashboard Info section with their "Last seen" number constantly increasing.

            I know this can happen if submitted tasks hold the GIL for too long but that's not the case here. I'm talking about workers for which something went wrong (probably unrelated to dask or the task itself).
            They will not come back and are not detected as dead either.

            The problem is that tasks submitted on these workers (they become unresponsive after receiving a task, maybe when loading the environment) never end and block everything.

            Is there a setting allowing to "timeout" or "invalidate" a worker if it was unresponsive for a given time ?

            If not, is it possible and what would be the recommended way to manually do this invalidation and dispatch remaining tasks on other workers ?

            Thanks in advance for any help regarding this issue.

            ...

            ANSWER

            Answered 2021-Apr-15 at 14:54

            If anyone is wondering the same thing, the answer was given in the following topic.

            Setting the worker-ttl parameter allows to consider a worker as dead if not seen for a specified amount of time.

            Source https://stackoverflow.com/questions/66221545

            QUESTION

            How to import parameters from one React component to another
            Asked 2021-Apr-15 at 04:29

            Please apologize my lack of knowledge but I'm new to React and JavaScript.

            I'm building a Website where I have a Sidebar and a Navbar on top of the page. The Sidebar is activated / deactivated via an hamburger menu which is located in the Navbar-component. It is activated via CSS-classes:

            My Problem now is, that I dont know how to transfer the variables toggleButton and isActive from the Navbar.jsx where they are declared to the Sidebar.jsx where I need them to activate my Sidebar. Do I need to import the js files? Is it possible to export isActive and toggleButton seperatly from the JSX-Code?

            Thanks for your help! :)

            This is my Code:

            Navbar-component

            ...

            ANSWER

            Answered 2021-Apr-15 at 04:29

            One possible approach is to move the state one level up.

            Source https://stackoverflow.com/questions/66995556

            QUESTION

            Unpack JSON lines to pandas dataframe
            Asked 2021-Apr-14 at 18:38

            I am dealing with the JSON line format and trying to "unpack" the dictionary objects inside a single list. Since it's using a list to save the dictionary object, I haven't found any post that deals with the issue before. The data looks like this, which there are bunch of nested dictionaries inside a list object:

            ...

            ANSWER

            Answered 2021-Apr-14 at 18:27

            If your data file looks like this:

            Source https://stackoverflow.com/questions/67096478

            QUESTION

            Julia Distributed, redundant iterations appearing
            Asked 2021-Mar-23 at 11:53

            I ran

            ...

            ANSWER

            Answered 2021-Mar-23 at 11:53

            As pointed out by adamslc on the Julia discourse, the proper way to use Julia on a cluster is to either

            • Start a session with one core from the job script, add more with addprocs() in the Julia script itself
            • Use more specialized Julia packages

            https://discourse.julialang.org/t/julia-distributed-redundant-iterations-appearing/57682/3

            Source https://stackoverflow.com/questions/66739636

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install pbs

            Checkout the branch containing the version you wish to install. Latest is ``2.X``:.
            Clone the repository: cd /path/to/ git clone https://github.com/prisms-center/pbs.git cd pbs
            Checkout the branch containing the version you wish to install. Latest is ``2.X``: git checkout 2.X
            From the root directory of the repository: make install You might need to set the following environment variables: BIN: This specifies where the scripts ``pstat``, ``psub``, and ``taskmaster`` will be installed. If not set, the default location is ``/usr/local/bin`` PYINSTALL: This specifies where to install the Python package ``pbs``. If not set, it uses the default distutils location. Note for flux users: **

            Support

            The python package pbs is documented python-style. Documentation can be viewed from the python interactive shell with: ```help(pbs)```, ```help(pbs.job)```, etc. The python scripts pstat, psub, and taskmaster have usage information that can be viewed with the ```-h``` or ```--help``` options.
            Find more information at:

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            CLONE
          • HTTPS

            https://github.com/prisms-center/pbs.git

          • CLI

            gh repo clone prisms-center/pbs

          • sshUrl

            git@github.com:prisms-center/pbs.git

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