ProDy | A Python Package for Protein Dynamics Analysis | Dataset library

by prody Python Version: v2.4.0 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | ProDy Summary

ProDy is a Python library typically used in Artificial Intelligence, Dataset applications. ProDy has build file available and it has low support. However ProDy has 52 bugs, it has 2 vulnerabilities and it has a Non-SPDX License. You can download it from GitHub.

A Python Package for Protein Dynamics Analysis

Support

Quality

Security

License

Reuse

Support

ProDy has a low active ecosystem.

It has 316 star(s) with 124 fork(s). There are 22 watchers for this library.

It had no major release in the last 12 months.

There are 70 open issues and 525 have been closed. On average issues are closed in 89 days. There are 18 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ProDy is v2.4.0

Quality

ProDy has 52 bugs (5 blocker, 0 critical, 34 major, 13 minor) and 2457 code smells.

Security

ProDy has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ProDy code analysis shows 2 unresolved vulnerabilities (2 blocker, 0 critical, 0 major, 0 minor).

There are 34 security hotspots that need review.

License

ProDy has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

ProDy releases are available to install and integrate.

Build file is available. You can build the component from source.

ProDy saves you 22794 person hours of effort in developing the same functionality from scratch.

It has 44629 lines of code, 2280 functions and 226 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed ProDy and discovered the below as its top functions. This is intended to give you an instant insight into ProDy implemented functionality, and help decide if they suit your requirements.

Parse images from a STAR STAR STAR file
Parse an ECDD stream
Parse an EPD file
Set coordinates of the mesh
Return a dictionary of Polymers
Get a sequence from a list of resnames
Parse STAR section
Runs the clustenm ensemble
Build the chord set
Assign blocks to atoms
Write a PSF file
Parse the DCD header
Visualize projection
Fetch a single record
Get a sheet from a list of lines
Write the given modes to the given path
Build a protein sequence
Get the range of the sheet
Parse NME file
R Write a VMDStiffness to a VMD file
Refine an MSA instance
Parse a PSF file
Plot a molecule
Calculate the rank orderological rank order
Add a coordinate set
Fetches the pciand xml file from the specified cciand file

Get all kandi verified functions for this library.

ProDy Key Features

No Key Features are available at this moment for ProDy.

ProDy Examples and Code Snippets

No Code Snippets are available at this moment for ProDy.

Community Discussions

Trending Discussions on ProDy

How to parameterize a column for aggregation in Power BI desktop?

How to get a echoed input field value using Php

/bin/sh: 1: Syntax error: EOF in backquote substitution

QUESTION

How to parameterize a column for aggregation in Power BI desktop?

Asked 2020-Jan-11 at 13:42

I have users who would like to be able to modify what columns a table aggregates by. My issue is that I seem unable to do this in Power BI. I basically want to be able to do the following in SQL:

...

ANSWER

Answered 2020-Jan-11 at 13:42

One solution to this is to add two list values parameters and use their values in Power Query M code to modify the database query. Lets assume that you have a table Data with columns Department, Product and Revenue. For simplicity I will add one more column, named Dummy Column, with all rows having the same value (e.g. null). I will explain why later in this post. So the table looks like this:

Then in your report specify a query when adding this table to your model (lets assume we will import it, but in general you can do this in DirectQuery too):

Now if you look the M code you will see the above query there:

Source https://stackoverflow.com/questions/59686829

QUESTION

How to get a echoed input field value using Php

Asked 2018-Nov-27 at 04:08

How can i get the echoed input value using $_post method? I already tried $_POST['prody']; to get the echoed input field value but it don't work.

...

ANSWER

Answered 2018-Nov-27 at 04:08

Here's how I've accomplished a similar task.

Source https://stackoverflow.com/questions/53491709

QUESTION

/bin/sh: 1: Syntax error: EOF in backquote substitution

Asked 2017-Feb-15 at 06:44

I created a new task in crontab as shown below :

...

ANSWER

Answered 2017-Feb-15 at 06:44

The problem is that cron treats % as newlines. From crontab POSIX man page:

Percent-signs (%) in the command, unless escaped with backslash \, will be changed into newline characters, and all data after the first % will be sent to the command as standard input.

Also use Command Substitution syntax as $() over the legacy `` syntax as

You could change your command to something like,

Source https://stackoverflow.com/questions/42241371

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ProDy

You can download it from GitHub.
You can use ProDy like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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