pyseqlogo | Python package to plot sequence logos | Data Visualization library

by saketkc Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | pyseqlogo Summary

pyseqlogo is a Python library typically used in Analytics, Data Visualization applications. pyseqlogo has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Python package to plot sequence logos

Support

Quality

Security

License

Reuse

Support

pyseqlogo has a low active ecosystem.

It has 27 star(s) with 15 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 4 have been closed. On average issues are closed in 89 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pyseqlogo is current.

Quality

pyseqlogo has 0 bugs and 0 code smells.

Security

pyseqlogo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pyseqlogo code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

pyseqlogo is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pyseqlogo releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

pyseqlogo saves you 479 person hours of effort in developing the same functionality from scratch.

It has 1128 lines of code, 45 functions and 13 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed pyseqlogo and discovered the below as its top functions. This is intended to give you an instant insight into pyseqlogo implemented functionality, and help decide if they suit your requirements.

Draw a logo
Calculate the relative information
Calculate information for a given data type
Calculate the info matrix
Update the deploy password
Save configuration to file
Load yaml config file
Prepend a line to a file
Load motif scores
Calculate the PMF
Encrypt a password
Load a public key
Draw a protein plot
Fetch the public key for a given repo
Unwrap a nested dictionary

Get all kandi verified functions for this library.

pyseqlogo Key Features

No Key Features are available at this moment for pyseqlogo.

pyseqlogo Examples and Code Snippets

No Code Snippets are available at this moment for pyseqlogo.

Community Discussions

Trending Discussions on pyseqlogo

sequence logos in matplotlib: aligning xticks

QUESTION

sequence logos in matplotlib: aligning xticks

Asked 2019-Nov-30 at 06:42

I am trying to draw sequence logos using matplotlib. The entire code is available on gist

The relevant portion is:

...

ANSWER

Answered 2017-Mar-07 at 07:16

I would suggest to work in data coordinates and unit coordinates throughout the script.

gact.py
Script to plot a letter at a given position with a given scale. One obstacle is that the letters created by TextPath have their lower left corner at relative position (0,0) and that they don't span the complete range up to (1,1). We therefore need to shift the TextPath to the left such that the lower center of the letter is at (0,0) and introduce a globscale scaling parameter, which makes the letter 1 unit in height. Unfortunately this depends on the font being used, so for a different font, one has to adapt the x coordinate and the globscale parameter again.

Source https://stackoverflow.com/questions/42615527

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pyseqlogo

You can download it from GitHub.
You can use pyseqlogo like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: