tableone | Create `` Table 1 '' for research papers in Python | Analytics library

by tompollard Python Version: 0.9.1 License: MIT

X-Ray Key Features Code Snippets(1)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | tableone Summary

tableone is a Python library typically used in Analytics applications. tableone has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install tableone' or download it from GitHub, PyPI.

At a high level, you can use the package as follows:.

Support

Quality

Security

License

Reuse

Support

tableone has a low active ecosystem.

It has 131 star(s) with 32 fork(s). There are 8 watchers for this library.

There were 2 major release(s) in the last 12 months.

There are 24 open issues and 80 have been closed. On average issues are closed in 174 days. There are 4 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of tableone is 0.9.1

Quality

tableone has 0 bugs and 108 code smells.

Security

tableone has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

tableone code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

tableone is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

tableone releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

tableone saves you 892 person hours of effort in developing the same functionality from scratch.

It has 2613 lines of code, 96 functions and 6 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed tableone and discovered the below as its top functions. This is intended to give you an instant insight into tableone implemented functionality, and help decide if they suit your requirements.

Calculate the dipole - corrected dipole
R Evaluate the kernel function
Compute the cumulative distance matrix
Calculate the dip and the closest unimodal distribution
Perform the hip transformation on the pivot table
Calculates the p - value p - value p - value
Calculates the p - value p - value p - value p - value
Calculate tabulated p - value for dipole
Create a single table from data
Create row labels
Compute the unique indices of unique elements
Create the SMD table
Compute the standard deviation between two data arrays
Compute the covariance matrix
Return a summary of the t1 metric
Return the standard deviation
Create HTT test table from data
Compute the p - value test for a given variable
Describe the continuous data
Return a warning if c is non - continuous
Number of far out outliers
Compute the outliers for a given threshold
Count the number of outliers

Get all kandi verified functions for this library.

tableone Key Features

No Key Features are available at this moment for tableone.

tableone Examples and Code Snippets

tableone,Example usage

Python

Lines of Code : 11

License : Permissive (MIT)

Copy

from tableone import TableOne, load_dataset
import pandas as pd

data=load_dataset('pn2012')

columns = ['Age', 'SysABP', 'Height', 'Weight', 'ICU', 'death']

categorical = ['ICU', 'death']

groupby = ['death']
nonnormal = ['Age']
labels={'death': 'm

Community Discussions

Trending Discussions on tableone

Using JavaScript Promise All - is this syntax valid?

Gather and mutate multiple columns in R

How to sort frequencies in CreateTableOne

Oracle : ORA-00933: SQL command not properly ended

How to query records one table by checking record field in another?

Fill DTO from two distinct objects

how to include 'column_spec' in the output of datasummary?

Kaplan Meier curve after IPTW

Use summary(CreateTableOne) in HTML Output

Django Select from a Subquery

QUESTION

Using JavaScript Promise All - is this syntax valid?

Asked 2022-Mar-03 at 14:29

I have two tables with users, where each id for one user is same in both tables (don't ask why I have two user tables). At some point, I need to filter users from table 1, and if certain condition is true, I store a promise (deleting request) for each user into (let's call it) tableOnePromises. I do the same for table 2. In order to empty table 2, I MUST first empty table one due to some requirements. this is what I did:

...

ANSWER

Answered 2022-Mar-03 at 14:29

Assuming the code using await is inside an async function (or at the top level of a module), the syntax is correct, but it's probably not what I'd use (in general, avoid mixing async/await with explicit callbacks via .then and .catch), and separately it's probably not working quite as you expect (this is borne out by your saying that your code was failing to delete from table-two).

For any particular id value, your code starts deleting from table-one and then immediately starts deleting from table-two without waiting for the deletion in table-one to complete:

Source https://stackoverflow.com/questions/71338112

QUESTION

Gather and mutate multiple columns in R

Asked 2022-Jan-14 at 16:16

I have three measurements, each with two time points.

...

ANSWER

Answered 2022-Jan-14 at 14:57

nr <- c("1", "2", "3", "4")
test_1_pre <- c(1,5,8,2)
test_1_post <- c(2,7,3,6)
test_2_pre <- c(6,3,6,5)
test_2_post <- c(9,8,9,1)
test_3_pre <- c(12,2,4,6)
test_3_post <- c(4,7,6,6)

df <- data.frame(nr, test_1_pre, test_1_post, test_2_pre,
                 test_2_post, test_3_pre, test_3_post)

df_2 <- df %>%
  gather(test_1_pre, test_1_post, test_2_pre, test_2_post,
         test_3_pre, test_3_post,
         key="score", value="value") %>%
  mutate(pre_post = case_when(score == "test_1_pre" ~ 'pre',
                              score == "test_1_post" ~'post',
                              score == "test_2_pre" ~ 'pre',
                              score == "test_2_post" ~ 'post',
                              score == "test_3_pre" ~ 'pre',
                              score == "test_3_post" ~'post'))%>%
  pivot_wider(names_from="score", values_from="value")%>%
  gather(test_1_pre, test_1_post,
         key="test_1_old", value="test_1") %>%
  gather(test_2_pre, test_2_post,
         key="test_2_old", value="test_2") %>%
  gather(test_3_pre, test_3_post,
         key="test_3_old", value="test_3")

vars_df <- c("test_1", "test_2", "test_3")


table_df <- CreateTableOne(vars = vars_df,
                                 data = df_2,
                                 strata = "pre_post")

tabelle.table_df<-print(table_df)

Source https://stackoverflow.com/questions/70711340

QUESTION

How to sort frequencies in CreateTableOne

Asked 2021-Dec-17 at 15:56

Here is a representation of my dataset

...

ANSWER

Answered 2021-Dec-17 at 15:56

Change the factor levels to be in decreasing order of frequency.

Source https://stackoverflow.com/questions/70395497

QUESTION

Oracle : ORA-00933: SQL command not properly ended

Asked 2021-Dec-15 at 19:54

I'm running into an oracle error,

ORA-00933: SQL command not properly ended

With the follwing.

...

ANSWER

Answered 2021-Dec-15 at 19:54

You didn't post CREATE TABLE statements so I did that myself.

Source https://stackoverflow.com/questions/70366526

QUESTION

How to query records one table by checking record field in another?

Asked 2021-Nov-19 at 15:02

I have two tables:

TableOne

id name orgId id-1 One org-1 id-2 Two org-1 id-3 Three org-1 id-4 Four org-2

TableTwo

id status id-1 Ok diff-id-1 Ok diff-id-2 Ok

How to write a query to retrieve records from TableOne where orgId=org-1 and userId is not present in TableTwo?

In JS I would write a if as a two for loops.

I wrote the beginning of a statement:

...

ANSWER

Answered 2021-Nov-19 at 14:35

You can use exists with a subquery:

Source https://stackoverflow.com/questions/70036397

QUESTION

Fill DTO from two distinct objects

Asked 2021-Nov-17 at 16:10

I have the following DTO:

...

ANSWER

Answered 2021-Nov-17 at 00:17

You can join your table results. Something like this:

Source https://stackoverflow.com/questions/69995280

QUESTION

how to include 'column_spec' in the output of datasummary?

Asked 2021-Oct-30 at 23:43

I am running the following code in R:

...

ANSWER

Answered 2021-Oct-30 at 12:22

I believe that this is a limitation in the kableExtra package, and not in the modelsummary package, as reported here. (Note that modelsummary does not actually draw tables itself, but rather supports external packages to do it -- kableExtra, gt, flextable, huxtable).

Right now, kableExtra tables with in-line histograms or boxplots only work out-of-the-box for HTML output or in PDF documents produced by Rmarkdown. There might be a way to save the mini-plots in .SVG format for later use in a separate LaTeX document. My guess is that this is going to be quite tricky, but you may want to read the hints at the Github link posted above.

Here is a minimal example which reproduces your problem with a simple kableExtra table (note again that modelsummary is not involved):

Source https://stackoverflow.com/questions/69774033

QUESTION

Kaplan Meier curve after IPTW

Asked 2021-Oct-24 at 22:01

I want to use IPTW to find the effects of a medication on cardiovascular death (1), which competes with non-cardiovascular death (2) and survival (0). After the IPTW, I would like to do a competing risk analysis to find the effect of the medication on cardiovascular death and plot the resulting Kaplan Meier curve.

This is my start

...

ANSWER

Answered 2021-Oct-24 at 22:01

A Kaplan-Meier plot is very naive to multiple covariates, and to competing risks. I highly doubt it is the best way to analyse your data in this instance, however it could be used to investigate and so here is the solution.

If you want to find the four Kaplan-Meier curves for the two events, you can use the following code:

Source https://stackoverflow.com/questions/69591004

QUESTION

Use summary(CreateTableOne) in HTML Output

Asked 2021-Oct-24 at 17:55

I use the CreateTableOne function to create a table for descriptive statistics - as an example I used the mtcars dataset (and modified two variables to a factor to simulate categorical variables).

...

ANSWER

Answered 2021-Oct-24 at 17:55

I'm not sure about {tableone} but here is a solution using the package {crosstable}.

Disclaimer: I'm the author of this package.

Source https://stackoverflow.com/questions/69554974

QUESTION

Django Select from a Subquery

Asked 2021-Oct-05 at 09:32

I want to query with window function and then do some group by aggregation on the subquery. But I couldn't make it with ORM method. It will return aggregate function calls cannot contain window function calls

Is there any way to make a query like SQL below without using .raw()

...

ANSWER

Answered 2021-Oct-05 at 09:32

You can use subqueries in Django, you don't need to use window functions. First the subquery is a Part queryset that is annotated with the max count from TableOne

Source https://stackoverflow.com/questions/69444726

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install tableone

To install the package with pip, run:.

Support

For documentation, see: http://tableone.readthedocs.io/en/latest/. An executable demonstration of the package is available on GitHub as a Jupyter Notebook. The easiest way to try out this notebook is to open it in Google Colaboratory. A paper describing our motivations for creating the package is available at: https://doi.org/10.1093/jamiaopen/ooy012.

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