zenodo | Research. Shared. -

 by   zenodo Python Version: Current License: GPL-2.0

kandi X-RAY | zenodo Summary

kandi X-RAY | zenodo Summary

null

Research. Shared.
Support
    Quality
      Security
        License
          Reuse

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of zenodo
            Get all kandi verified functions for this library.

            zenodo Key Features

            No Key Features are available at this moment for zenodo.

            zenodo Examples and Code Snippets

            Anaconda: "kraken" is not running in my virtual environment despite being installed there
            Pythondot img1Lines of Code : 12dot img1License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            # Clone the master branch into kraken directory.
            $ git clone https://github.com/mittagessen/kraken.git
            
            # And then, Use a virtualenv or just:
            
            $ pip3 install .
            
            
            $ kraken list
            $ Retrieving model list .✓
            10.5281/zeno

            Community Discussions

            QUESTION

            multiple xml files from directory to character strings in R
            Asked 2021-Jan-15 at 18:08

            I have seen several similar questions, but none that addressed specifically my problem:

            given a novel in xml file (this is a very small cut from the start and the end)

            ...

            ANSWER

            Answered 2021-Jan-15 at 18:08

            This could be achieved like so:

            1. Put your code in a function which takes a filename as an argument
            2. Use list.files to get a vector of all xml files in your directory
            3. Use e.g. lapply to loop over the files, which will return a list of your texts.

            Source https://stackoverflow.com/questions/65740654

            QUESTION

            Modify gupdatedb (GNU updatedb command) to insert parallel command
            Asked 2020-Aug-15 at 10:36

            I am working on MacOS 10.15 with the tool glocate and gupdatedb from findutils package installed with brew.

            I would like to integrate the shell command "parallel" into the script gupdatedb into order to build more fastly the database.

            In the original version of script gupdatedb command, I get :

            ...

            ANSWER

            Answered 2020-Aug-04 at 14:36

            Updated Answer

            The problem is on the line after the line containing A2 in the file /usr/local/Cellar/findutils/4.7.0/libexec/bin/gupdatedb. Currently, it is of the form:

            Source https://stackoverflow.com/questions/63174961

            QUESTION

            Reading in a stata .dta file as a python pandas data frame using pd.read_stata()
            Asked 2020-Aug-11 at 09:52

            I want to read in an .dta file as a pandas data frame.

            I've tried using code from https://www.fragilefamilieschallenge.org/using-dta-files-in-python/ but it gives me an error.

            Thanks for any help!

            ...

            ANSWER

            Answered 2020-Aug-11 at 09:52

            open can be used when you have a file saved locally on your machine. With pd.read_stata this is not necessary however, as you can specify the file path directly as a parameter.

            In this case you want to read in a .dta file from a url so this does not apply. The solution is simple though, as pd.read_stata can read in files from urls directly.

            Source https://stackoverflow.com/questions/63345170

            QUESTION

            How to avoid a bug in DBpedia Spotlight in python?
            Asked 2020-May-07 at 05:38

            When I run this program it gives me an error in the text and I don't know why, I have tried to run it also from a file and it also gives me an error, how can it work?

            ...

            ANSWER

            Answered 2020-May-07 at 05:38

            The problem with your first code snippet is that the text you're passing as a parameter to the HTTP call is too long, if you print the response object you'll see:

            that corresponds to 414 URI Too Long Reference

            If you pass a smaller text, dbpedia-spotlight will be able to annotate the entities for you.

            For the second code that you put, you have two problems, the first one is that dbpedia-spotlight may respond with 403 status after consecutive calls to the annotate service, to check that I suggest you to do:

            Source https://stackoverflow.com/questions/61647052

            QUESTION

            What unit are those GPS-coordinates?
            Asked 2020-Jan-18 at 14:17

            I have a somewhat tricky problem: I want to draw the GPS-data from this dataset: https://zenodo.org/record/3267184

            The problem is, that the coordinates (Longitude and Latitude) are somewhat cryptic, meaning I don't know which unit they are in and therefore I can't print them on a map. I have already tried a bunch of converters without any luck. BTW: The coordinates should be somewhere in Austria.

            Here is some of the data: (second column is a timestamp) Latitude:

            ...

            ANSWER

            Answered 2020-Jan-18 at 14:17

            I finally found the answer. It was already in the correct unit - just needed to divide the values by 60 (minutes) and it worked :)

            Thanks everyone who tried to help me :)

            Source https://stackoverflow.com/questions/59800097

            QUESTION

            How to template Zenodo auto release archive
            Asked 2019-Aug-13 at 08:08

            I would like to use Zenodo to archive next releases of my project. The project repository is on GitHub. I configured connection from Zenodo to GitHub and when I'm creating next release it is automatically stored in Zenodo.

            But:

            • description is only description form release,
            • the license is set to other instead of GPL,
            • authors are showed by their nick from GitHub, not by name (also without orcid).
            • many others fields are set to empty.

            After I edit this in one release I need to fix it in next release.

            Is there any option to automatize it? Some configuration file?

            Here is my project https://zenodo.org/record/3363876

            ...

            ANSWER

            Answered 2019-Aug-13 at 08:08

            Note that Zenodo automatically extracts metadata about your repository from GitHub APIs. For example, the authors are determined from the repository's contributor statistics. This automatic extraction is solely a best guess. You can, however, add a ".zenodo.json" file in the root of your repository to explicitly define the metadata (list of authors, title, license etc).

            The format of the JSON file is the same as for our REST API and this is an example of the minimal required metadata:

            Source https://stackoverflow.com/questions/57427477

            QUESTION

            loop through and load a zipped folder of yaml files
            Asked 2019-Jul-14 at 17:23

            I have a zipped folder containing 15 000 yaml files. I'd like to iterate through the folder using yaml.safe_load so that each file is in a dictionary format and I can extract information from each file that I need. I've written some code so far using zipfile.ZipFile and yaml.safe_load but it only works for the first file in the zipped folder. Would anyone please mind taking a look and explaining what I'm misunderstanding please?

            ...

            ANSWER

            Answered 2019-Jul-14 at 17:23

            It seems to me like in the file "yamlfile_10_5281_zenodo_1745362.yaml" there is a bad token name. Try running it without this file. In python \t is representative of a tab and so cannot be included in a string ect normally without escaping it.

            Source https://stackoverflow.com/questions/57029540

            QUESTION

            How to get only the first n layers of a network loaded from a .pb file
            Asked 2018-Nov-01 at 21:56

            What I want: A protobuf file which contains all the layers of a pretrained AlexNet up until the pool5 layer.

            What I have: I downloaded the file of the weights of AlexNet here and converted it to a protobuf file of the model and a frozen protobuf file with this code. I loaded the resulting protobuf file with this code:

            ...

            ANSWER

            Answered 2018-Nov-01 at 21:56
            graph_def = tf.GraphDef()
            with open('alexnet.pb', 'rb') as f:
                graph_def.ParseFromString(f.read())
            
            with tf.Graph().as_default() as graph:
                importer.import_graph_def(graph_def, name='')
            
            new_model = tf.GraphDef()
            
            with tf.Session(graph=graph) as sess:    
                for n in sess.graph_def.node:            
                    nn = new_model.node.add()
                    nn.CopyFrom(n)
                    if n.op.name == 'pool5':
                        break;
            
            tf.train.write_graph(new_model, '.', 'cut_model.pb', as_text=False)
            

            Source https://stackoverflow.com/questions/52648516

            QUESTION

            Multivariate Emission Hidden Markov Model in STAN
            Asked 2018-Aug-14 at 06:06

            I'm trying to implement a HMM where the observations are the emissions from a first order HMM convolved with a wavelet.

            That is:

            With:

            and

            The code I have so far is, following along with the one dimensional case outlined here:

            ...

            ANSWER

            Answered 2018-Aug-14 at 06:06

            Large covariance matrices can easily be numerically singular, even in this case where they are positive definite by construction. In order to avoid this problem and unnecessary computation, the usual thing to do in Stan is to declare the parameter as the Cholesky factor of a covariance or correlation matrix (in which case you also need to declare a positive vector of standard deviations in the parameters block).

            In that case, you would call the multi_normal_cholesky_lpdf function, which conditions on a Cholesky factor of a covariance matrix rather than the covariance matrix itself, which in turn can be a diag_pre_multiply of a vector of standard deviations and the Cholesky factor of a correlation matrix. However, in that case, you would need to switch the priors from an inverse Wishart to a lkj_corr_cholesky_lpdf for the Cholesky factor of the correlation matrix and whatever you want (such as exponential_lpdf) for the standard deviations. This is all discussed in the Stan user manual.

            Another option would be to integrate out the covariance matrices.

            Source https://stackoverflow.com/questions/51830770

            QUESTION

            Wrong parsing with BeautifulSoup
            Asked 2018-Mar-04 at 14:22

            I want to access to the title of this website: https://zenodo.org/search?page=1&size=20&q=broma Actualy, I use BeautifulSoup, but when I access with this code results are empty ([]):

            ...

            ANSWER

            Answered 2018-Mar-04 at 14:22

            This website use AJAX to display the result,you can find the AJAX request to get the JSON result.

            Source https://stackoverflow.com/questions/49096001

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install zenodo

            No Installation instructions are available at this moment for zenodo.Refer to component home page for details.

            Support

            For feature suggestions, bugs create an issue on GitHub
            If you have any questions vist the community on GitHub, Stack Overflow.
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • sshUrl

            git@github.com:zenodo/zenodo.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link