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kandi X-RAY | zenodo Summary
kandi X-RAY | zenodo Summary
Research. Shared.
Top functions reviewed by kandi - BETA
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of zenodo
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zenodo Examples and Code Snippets
# Clone the master branch into kraken directory.
$ git clone https://github.com/mittagessen/kraken.git
# And then, Use a virtualenv or just:
$ pip3 install .
$ kraken list
$ Retrieving model list .✓
10.5281/zeno
Community Discussions
Trending Discussions on zenodo
QUESTION
I have seen several similar questions, but none that addressed specifically my problem:
given a novel in xml file (this is a very small cut from the start and the end)
...ANSWER
Answered 2021-Jan-15 at 18:08This could be achieved like so:
- Put your code in a function which takes a filename as an argument
- Use
list.files
to get a vector of all xml files in your directory - Use e.g.
lapply
to loop over the files, which will return a list of your texts.
QUESTION
I am working on MacOS 10.15 with the tool glocate
and gupdatedb
from findutils
package installed with brew
.
I would like to integrate the shell command "parallel
" into the script
gupdatedb
into order to build more fastly the database.
In the original version of script gupdatedb
command, I get :
ANSWER
Answered 2020-Aug-04 at 14:36Updated Answer
The problem is on the line after the line containing A2
in the file /usr/local/Cellar/findutils/4.7.0/libexec/bin/gupdatedb
. Currently, it is of the form:
QUESTION
I want to read in an .dta
file as a pandas data frame.
I've tried using code from https://www.fragilefamilieschallenge.org/using-dta-files-in-python/ but it gives me an error.
Thanks for any help!
...ANSWER
Answered 2020-Aug-11 at 09:52open
can be used when you have a file saved locally on your machine. With pd.read_stata
this is not necessary however, as you can specify the file path directly as a parameter.
In this case you want to read in a .dta file from a url so this does not apply. The solution is simple though, as pd.read_stata
can read in files from urls directly.
QUESTION
When I run this program it gives me an error in the text and I don't know why, I have tried to run it also from a file and it also gives me an error, how can it work?
...ANSWER
Answered 2020-May-07 at 05:38The problem with your first code snippet is that the text you're passing as a parameter to the HTTP call is too long, if you print the response object you'll see:
that corresponds to
414 URI Too Long
Reference
If you pass a smaller text, dbpedia-spotlight will be able to annotate the entities for you.
For the second code that you put, you have two problems, the first one is that dbpedia-spotlight may respond with 403 status after consecutive calls to the annotate service, to check that I suggest you to do:
QUESTION
I have a somewhat tricky problem: I want to draw the GPS-data from this dataset: https://zenodo.org/record/3267184
The problem is, that the coordinates (Longitude and Latitude) are somewhat cryptic, meaning I don't know which unit they are in and therefore I can't print them on a map. I have already tried a bunch of converters without any luck. BTW: The coordinates should be somewhere in Austria.
Here is some of the data: (second column is a timestamp) Latitude:
...ANSWER
Answered 2020-Jan-18 at 14:17I finally found the answer. It was already in the correct unit - just needed to divide the values by 60 (minutes) and it worked :)
Thanks everyone who tried to help me :)
QUESTION
I would like to use Zenodo to archive next releases of my project. The project repository is on GitHub. I configured connection from Zenodo to GitHub and when I'm creating next release it is automatically stored in Zenodo.
But:
- description is only description form release,
- the license is set to other instead of GPL,
- authors are showed by their nick from GitHub, not by name (also without orcid).
- many others fields are set to empty.
After I edit this in one release I need to fix it in next release.
Is there any option to automatize it? Some configuration file?
Here is my project https://zenodo.org/record/3363876
...ANSWER
Answered 2019-Aug-13 at 08:08Note that Zenodo automatically extracts metadata about your repository from GitHub APIs. For example, the authors are determined from the repository's contributor statistics. This automatic extraction is solely a best guess. You can, however, add a ".zenodo.json" file in the root of your repository to explicitly define the metadata (list of authors, title, license etc).
The format of the JSON file is the same as for our REST API and this is an example of the minimal required metadata:
QUESTION
I have a zipped folder containing 15 000 yaml files. I'd like to iterate through the folder using yaml.safe_load so that each file is in a dictionary format and I can extract information from each file that I need. I've written some code so far using zipfile.ZipFile and yaml.safe_load but it only works for the first file in the zipped folder. Would anyone please mind taking a look and explaining what I'm misunderstanding please?
...ANSWER
Answered 2019-Jul-14 at 17:23It seems to me like in the file "yamlfile_10_5281_zenodo_1745362.yaml"
there is a bad token name. Try running it without this file. In python \t
is representative of a tab and so cannot be included in a string ect normally without escaping it.
QUESTION
What I want: A protobuf file which contains all the layers of a pretrained AlexNet up until the pool5 layer.
What I have: I downloaded the file of the weights of AlexNet here and converted it to a protobuf file of the model and a frozen protobuf file with this code. I loaded the resulting protobuf file with this code:
...ANSWER
Answered 2018-Nov-01 at 21:56graph_def = tf.GraphDef()
with open('alexnet.pb', 'rb') as f:
graph_def.ParseFromString(f.read())
with tf.Graph().as_default() as graph:
importer.import_graph_def(graph_def, name='')
new_model = tf.GraphDef()
with tf.Session(graph=graph) as sess:
for n in sess.graph_def.node:
nn = new_model.node.add()
nn.CopyFrom(n)
if n.op.name == 'pool5':
break;
tf.train.write_graph(new_model, '.', 'cut_model.pb', as_text=False)
QUESTION
I'm trying to implement a HMM where the observations are the emissions from a first order HMM convolved with a wavelet.
That is:
With:
and
The code I have so far is, following along with the one dimensional case outlined here:
...ANSWER
Answered 2018-Aug-14 at 06:06Large covariance matrices can easily be numerically singular, even in this case where they are positive definite by construction. In order to avoid this problem and unnecessary computation, the usual thing to do in Stan is to declare the parameter as the Cholesky factor of a covariance or correlation matrix (in which case you also need to declare a positive vector of standard deviations in the parameters block).
In that case, you would call the multi_normal_cholesky_lpdf
function, which conditions on a Cholesky factor of a covariance matrix rather than the covariance matrix itself, which in turn can be a diag_pre_multiply
of a vector of standard deviations and the Cholesky factor of a correlation matrix. However, in that case, you would need to switch the priors from an inverse Wishart to a lkj_corr_cholesky_lpdf
for the Cholesky factor of the correlation matrix and whatever you want (such as exponential_lpdf
) for the standard deviations. This is all discussed in the Stan user manual.
Another option would be to integrate out the covariance matrices.
QUESTION
I want to access to the title of this website: https://zenodo.org/search?page=1&size=20&q=broma Actualy, I use BeautifulSoup, but when I access with this code results are empty ([]):
...ANSWER
Answered 2018-Mar-04 at 14:22This website use AJAX to display the result,you can find the AJAX request to get the JSON result.
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