wasabi | Prepare Sailfish and Salmon output for downstream analysis | Data Visualization library
kandi X-RAY | wasabi Summary
kandi X-RAY | wasabi Summary
Wasabi allows you to easily prepare Sailfish and Salmon output for downstream analysis. Currently, its main purpose it to prepare output for downstream analysis with sleuth.
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wasabi Key Features
wasabi Examples and Code Snippets
Lines of Code : 4License : Non-SPDX (NOASSERTION)
Copylibrary(wasabi)
data/samp1 data/samp2 data/samp3 data/samp4
> sfdirs <- file.path("data", c("samp1", "samp2", "samp3"))
> prepare_fish_for_sleuth(sfidrs)
source("http://bioconductor.org/biocLite.R")
biocLite("devtools") # only if devtools not yet installed
biocLite("COMBINE-lab/wasabi")
conda create -n wasabi r-wasabi
Community Discussions
Trending Discussions on wasabi
QUESTION
In my company we are deciding to move part of our backups to the cloud, and in particular, as the title suggests, we have configured wasabi backup. The first urgency is to move the backups to the proxmox inside the company on wasabi, but looking on the documentation and online I can't find a way to move the backups from the proxmox to wasabi. Do you have any suggestions or advice?
...ANSWER
Answered 2022-Mar-19 at 22:03We're looking to accomplish something similar with Proxmox and Wasabi. After some digging this afternoon, the most mature way of doing this would be to use Veeam with Agent Backup. Veeam does not officially support the Proxmox kernel, explained by staff here, and it doesn't seem like they have any intention of doing so. This means you cannot back up the VM/CTs from the hypervisor level (reliably). But, it seems that you can leverage the Agent Backup instead, and use the VBS (Veeam Backup Server) to push incremental backups to Wasabi. I use Veeam and Wasabi together with some clientele on ESXi for a 3-2-1 backup scheme with Agent Backups, works great. This is the approach we're going to take with Proxmox as well. Although it's more expensive than some cheap workaround, this backup method scales very well considering you can use VEM to manage other VBSs.
EDIT: Here's a few links to Veeam resources to check out:
- Veeam Agent Backup (Linux version, but they make a Windows and Mac agent too.)
- General VBR Resource Page
QUESTION
I want to play my HLS streams from Wasabi. I enabled S3 options in Ant Media Server Dashboard. But it seems that Ant Media Server uploads HLS files after the stream ends. How can I play HLS chunks on Wasabi?
...ANSWER
Answered 2022-Feb-09 at 10:19s3fs 1.88 and later buffers data locally and flushes according to the -o max_dirty_data flag, defaulting to 5 GB. If you reduce this value you should see updates more often. Note that these flushes require server-side copies and may do more IO than you anticipate.
QUESTION
I tried to cluster my dataset using K-mean, but there is a categorical data in column 9; so when I ran k-mean it had an error like this:
...ANSWER
Answered 2021-Dec-17 at 17:31To solve your specific issue, you can generate dummy variables to run your desired clustering.
One way to do it is using the dummy_columns() function from the fastDummies package.
QUESTION
I ran multiple imputation to impute missing data for 2 variables of a data frame, then I got a new data frame (with 2 columns for 2 imputed variables).
Now, I want to replace the 2 columns in the original data frame with the two newly imputed columns from my new dataframe. What should I do?
Original data frame new data frame for imputed variables
This is the code I used. Only 2 columns in this data frame are missing data, so I only imputed those two. Is that ok? Can you please suggest me a better way?
...ANSWER
Answered 2021-Dec-14 at 22:53Updated
As @dcarlson recommended, you can run mice on the entire dataframe, then you can use complete to get the whole output dataframe. Then, you can join the new data with your original dataframe.
QUESTION
I'm building a tool with ReactJS where (logged in) users can upload images to some kind of gallery that they can access from there user account whenever they like.
I plan to upload the data directly to a cloud storage (most likely wasabi) and store them there.
What are best pratices to let users access images in a secure way? Of course the user that uploaded the images, should be able to see them in his gallery, but no other user. I mean I can of course only show the user associated images in the galleries, but i am concerned about data protection and also direct access to the images. Is it enough to store the files e.g. in a folder with a hashed name, so that no one can guess the image path? Or are some other restrictions necessary? I just don't see how I can additionally restrict access to the images to be displayed in the account without drastically degrading the user experience.
Happy to read your thoughts.
Thanks!
...ANSWER
Answered 2021-Dec-13 at 01:09I had a similar issue where I couldn't simply give the URL of the image resource since those image resources were specific to certain users. I had my API return a byte stream for the image & then in my react app consume it as follows
QUESTION
I wanna create a S3 bucket that anyone can get object but only iam user can upload an object.
My bucket policy is like this. Anyone can read objects, but cannot do delete, list, create action.
...ANSWER
Answered 2021-Nov-08 at 04:11arn:aws:s3:::my_bucket is a bucket, not objects. Thus it should be:
QUESTION
I downloaded a requirements.txt file from a GitHub repository, but it appears to be little different than the normal format of requirements.txt file.
- Can you tell me how the author generated this kind of
requirements.txtfile? Which tools did they use? - How can I use this particular file format to instantiate the Python environment? I have tried executing the commands
conda install --file requirements.txtandpip install -r requirements.txton a Windows ‘ machine, but to no avail.
https://github.com/wvangansbeke/Unsupervised-Classification/blob/master/requirements.txt
...ANSWER
Answered 2021-Oct-17 at 01:46This looks like a conda environment.yml file. It can be used to create a conda environment, like so
QUESTION
data source: https://catalog.data.gov/dataset/nyc-transit-subway-entrance-and-exit-data
I tried looking for a similar problem but I can't find an answer and the error does not help much. I'm kinda frustrated at this point. Thanks for the help. I'm calculating the closest distance from a point.
...ANSWER
Answered 2021-Oct-11 at 14:21geopandas 0.10.1
- have noted that your data is on kaggle, so start by sourcing it
- there really is only one issue
shapely.geometry.MultiPoint()constructor does not work with a filtered series. Pass it a numpy array instead and it works. - full code below, have randomly selected a point to serve as
gpdPoint
QUESTION
I am using : nestJS, typescript, typeORM, postgresQL
I want to check if the input password is same with the data in db.
This is how I define User entity.
...ANSWER
Answered 2021-Sep-19 at 01:05This happen because with getRepository('User') there's no way to infer which entity this repository is referring to. Use getRepository(User) instead and then you'll see that repo is Repository, not Repository
Or, you could use User as a type: getRepository('User') if you don't want to import the class User.
btw this is TypeScript stuff. Learn more about Generics Types
QUESTION
I am working on a project and have shifted my environment from local windows to a linux server (via SSH). I only have limited access as the host server is from my college, I've installed many packages without issues (both with and without virtualenv). I'm working on Python 3.6.9.
I was able to install spacy and import it but I need to use the en_core_web_sm package which has to be installed additionally using the command python3 -m spacy download en_core_web_sm. However, I consistently face a PermissionError as seen in the logs below.
Why am I facing this error? Is it because I don't have administrator access on the /usr level (refer to last line of logs)? If yes, how come only this package in particular requires a higher level access? If no, are there any workaround for me to install the package, or do I need to contact the server administrator?
...ANSWER
Answered 2021-Aug-25 at 08:45It seems all other packages are installed under your user /home/jiayi/.local/python3.6/lib and this one tries to install itself globally in /usr/local/lib/python3.6/, not sure why. I guess you can give it installation folder or something.
Look here Where does spacy language model download?
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