ArchR | ArchR : Analysis of Regulatory Chromatin in R

by GreenleafLab R Version: v1.0.2 License: MIT

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | ArchR Summary

ArchR is a R library. ArchR has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

ArchR now supports paired scATAC-seq and scRNA-seq Analysis! See updates with importFeatureMatrix, addGeneExpressionMatrix, addIterativeLSI, addCombinedDims For a brief tutorial of these features : ArchR now directly supports both monocle3 and Slingshot based trajectory analysis! See updates with getMonocleTrajectories, addMonocleTrajectory, addSlingShotTrajectories For a brief tutorial of these features : Additionally ArchR now enables export of a peak matrix that is compatible with STREAM! See updates with exportPeakMatrixForSTREAM.

Support

Quality

Security

License

Reuse

Support

ArchR has a low active ecosystem.

It has 273 star(s) with 94 fork(s). There are 16 watchers for this library.

It had no major release in the last 12 months.

There are 14 open issues and 913 have been closed. On average issues are closed in 37 days. There are 9 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ArchR is v1.0.2

Quality

ArchR has 0 bugs and 0 code smells.

Security

ArchR has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ArchR code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ArchR is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

ArchR releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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ArchR Key Features

No Key Features are available at this moment for ArchR.

ArchR Examples and Code Snippets

No Code Snippets are available at this moment for ArchR.

Community Discussions

No Community Discussions are available at this moment for ArchR.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ArchR

For a full walk through of installation and frequently related issues please visit www.ArchRProject.com. If any of these steps fails, you should identify the offending package and troubleshoot that individual installation before proceeding. Additionally, please see the ArchR website (www.ArchRProject.com) where we have installation troubleshooting tips.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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