matR | Metagenomics Analysis Tools | Data Visualization library

 by   MG-RAST R Version: Current License: Non-SPDX

kandi X-RAY | matR Summary

kandi X-RAY | matR Summary

matR is a R library typically used in Analytics, Data Visualization applications. matR has no bugs, it has no vulnerabilities and it has low support. However matR has a Non-SPDX License. You can download it from GitHub.

Package matR (Metagenomics Analysis Tools for R) is an analysis client for the MG-RAST metagenome annotation engine, part of the US Department of Energy (DOE) Systems Biology Knowledge Base (KBase). Customized analysis and visualization tools securely access remote data and metadata within the popular open source R language and environment for statistical computing. See: CRAN (Comprehensive R Archive Network) hosts the package.
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              matR has a low active ecosystem.
              It has 21 star(s) with 10 fork(s). There are 16 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 11 open issues and 13 have been closed. On average issues are closed in 1061 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of matR is current.

            kandi-Quality Quality

              matR has no bugs reported.

            kandi-Security Security

              matR has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              matR has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              matR releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            matR Key Features

            No Key Features are available at this moment for matR.

            matR Examples and Code Snippets

            No Code Snippets are available at this moment for matR.

            Community Discussions

            QUESTION

            Inotify max file limit
            Asked 2021-Jun-03 at 09:48

            I am programming react app with electron in a docker environment. When I try to npm run dev, I got the following error :

            ...

            ANSWER

            Answered 2021-Jun-03 at 09:48

            Finally found a solution here

            Just add CHOKIDAR_USEPOLLING=true npm start to a local .env file

            Source https://stackoverflow.com/questions/67818755

            QUESTION

            Dynamically filter queryset with AJAX and Django Rest Framework
            Asked 2021-Apr-29 at 16:40
            models.py ...

            ANSWER

            Answered 2021-Apr-26 at 14:16

            Have you looked at Filtering against query paramters and Django Filter Backend in DRF docs ? For one thing, you don't need a sort_by param because DRF provides OrderingFilter built-in.

            I'd suggest using django-rest-framework-filters. Yes, you will have to read a lot of docs and understand internals but rolling your own implementation of parsing query parameters where you are basically passing user's input without sensitization to build queryset is a very big security red flag. Not to mention, it's also error prone and does not follow the Don't Repeat Yourself (DRY) principle which django is built upon.

            Source https://stackoverflow.com/questions/67268193

            QUESTION

            calculate means and occurences from multiple matrices
            Asked 2021-Feb-15 at 08:44

            I have a number of matrices that they all have the same type of elements but different lengths. Columns in all files are the same (lets call them "A" and "B") but rows between files are mostly the same elements but not always.

            Here are some example data (in the form of dataframes)

            ...

            ANSWER

            Answered 2021-Feb-15 at 08:44

            If you want to stick to base R:

            For the averaging task it makes things easier when you add your rowname as a column. This prevents autonumbering of rownames when combining the dataframes. You then can simply loop over every unique rowname and construct the averages. A quick and dirty solution could look like this:

            Source https://stackoverflow.com/questions/65918005

            QUESTION

            How do you convert from a level order tree to a preorder tree in R?
            Asked 2021-Jan-27 at 23:41

            I have a list which represents a tree being traversed in level order.

            The first digit is the number of children and the second is its "level", starting at 1.

            I want the program to output a list with the same elements as matr but in preorder instead.

            Example

            For the input: list(c(4,1), c(0,2), c(2,2), c(0,2), c(1,2), c(0,3), c(0,3), c(0,3))

            The output should be: list(c(4,1), c(0,2), c(2,2), c(0,3), c(0,3), c(0,2), c(1,2), c(0,3))

            I reckon the problem is with global variables? I've got it working in Python but not R when as far as I can see they are doing the same thing.

            This is what I have:

            ...

            ANSWER

            Answered 2021-Jan-27 at 23:41

            Never mind -- solved it

            Source https://stackoverflow.com/questions/65894836

            QUESTION

            Extract the name of subfolders and files after successful remote to local synchronization with WinSCP .NET assembly
            Asked 2021-Jan-11 at 08:14

            My work uses WinSCP .NET assembly for SFTP transfers. After successful transfer files from server to local, I want to list only names (without paths) of the files and folders that were synchronized.

            I'm working with PowerShell.

            This is my tree structure of my remote files: /home/etc/
            Folders: foldername1, foldername2. Under every foldername?, I have files matricule*.pdf

            ...

            ANSWER

            Answered 2021-Jan-08 at 09:26

            Use SynchronizationResult.Downloads to get the list of all downloaded files. The full path to the source file is in TransferEventArgs.FileName.

            Then iterate the list, removing synchronization root path from the file path and doing other modifications you need:

            Source https://stackoverflow.com/questions/65611240

            QUESTION

            how do I write code in accord with the tasks
            Asked 2020-Dec-23 at 06:34

            a matrix is given:

            ...

            ANSWER

            Answered 2020-Dec-23 at 06:30

            Your code has rows (m) and columns (n) swapped. Do it like this:

            Source https://stackoverflow.com/questions/65419902

            QUESTION

            Good way to cast `dlib::matrix` into `dlib::matrix`?
            Asked 2020-Nov-15 at 13:01

            What is a good way to cast dlib::matrix into dlib::matrix? For example, dlib::matrix into dlib::matrix >?

            Edit: I am looking for something more efficient than this:

            ...

            ANSWER

            Answered 2020-Nov-14 at 18:23

            What a cast would at least require that

            Source https://stackoverflow.com/questions/64836448

            QUESTION

            Insert multiple row with a unique value - SQL
            Asked 2020-Sep-21 at 19:07

            i want to insert multiples rows, my first column (MATR) should be each number of the table @MATR

            ...

            ANSWER

            Answered 2020-Sep-21 at 19:07

            I think you want insert . . . select:

            Source https://stackoverflow.com/questions/63998508

            QUESTION

            Problems with selection and postgresql/ sql checks
            Asked 2020-Sep-06 at 13:06

            I'm trying to make a boolean selection that returns true only if the tests of the types 0,1,2, have a result greater than or equal to 60. The query does not cause me problems at the syntactic level but I can not get 1 from the result . What am I doing wrong?

            ...

            ANSWER

            Answered 2020-Sep-06 at 13:06

            If you want students who have taken all three levels and never have a score less than 60, then one method is:

            Source https://stackoverflow.com/questions/63764409

            QUESTION

            'AttributeError : 'numpy.float32' object has no attribute 'ctypes''
            Asked 2020-Aug-13 at 04:02

            I'm trying to compute the dimensions of an image from the points that are ordered from Top-Left, Top-Right, etc.. so I can later perform a 4 point perspective transform & warp. (Using opencvSharp & numpy.net)

            I want to get the max-width and max-height as an integer from the NDarray but at this point it throws " Python.Runtime.PythonException: 'AttributeError : 'numpy.float32' object has no attribute 'ctypes''

            Not quite sure how to go about this as a Novice and this my first time working with this OpencvSharp and numpy.NET.

            ...

            ANSWER

            Answered 2020-Aug-13 at 04:02

            I managed to come up with a solution, by using the repr Property to return a string of the data then parse it to a float then cast to an Int.

            Source https://stackoverflow.com/questions/63382795

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install matR

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • HTTPS

            https://github.com/MG-RAST/matR.git

          • CLI

            gh repo clone MG-RAST/matR

          • sshUrl

            git@github.com:MG-RAST/matR.git

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