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On top of spaghetti, all covered in cheese....
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QUESTION
I am trying to work on a for loop to make running a function I've developed more efficient. However, when I put it in a for loop, it is overwriting columns that it should not be and returning incorrect results.
Edit: The error is that in the resulting dataframe MiSeq_Bord_Outliers_table0, the resulting columns containing label Outlier_type is returning incorrect outputs.
As per the Outlier_Hunter function, when Avg_Trim_Cov and S2_Total_Read_Pairs_Processed are below their
respective Q1 Thresholds their respective Outlier_type columns should read "Lower_Outlier", if between Q1 & Q3 Threshold, "Normal" and if above Q3 Threshold then "Upper_outlier". But when the for loop is executed, only "Upper_outlier" is shown in the Outlier_type columns.
Edit: The inputs have been simplified and tested on the different computer with a clean console. If there were any artifacts there before, they should have been eliminated now, and there should be no errors here now. It is important to run the outlier_results_1var part first. If you test run this code and get errors, please let me know which part failed.
Edit: MiSeq_Bord_Outliers_table0_error is the error that is being reproduced. This is the error result, not an input.
Can someone please tell me why is it returning these incorrect results and what I can do to fix it? I will upload the relevant code below. Or is there another way to do this without a for loop?
...ANSWER
Answered 2022-Feb-16 at 19:49For use in a loop like you do, it would be more useful to write your Outlier_Hunter()
function to take the target column as a character string rather than an expression.
To do that, try replacing all instances of !!varname
in your function with .data[[my_col]]
, and remove the enquo()
line altogether.
Note that with these changes, you also need to change how you call the function when you don't have the column name in a variable. For example, your single execution would become:
QUESTION
I have a string that I want to paste with indentation into RStudio using the {rstudioapi}. Here is a simple test string:
...ANSWER
Answered 2022-Jan-04 at 16:39I didn't hear about an indentation feature in rstudioapi
library.
But I know, that the styler
has this possibility.
Maybe, it will be also helpful for you.
An example:
QUESTION
Using googledrive4 package, accessing files on google drive is wonderfully easy.
...ANSWER
Answered 2021-Aug-12 at 01:55After a night of thinking, I found a solution in hoist()
QUESTION
Using the following data:
...ANSWER
Answered 2020-Jul-26 at 21:57We expand the rows with complete
(after doing a group by 'id') by getting the seq
uence of min
to max
+ 1 of 'year' for entire data and get the cumulative sum of 'y' after grouping by 'id'
QUESTION
I am using the locq2
function from the REAT
package in R. I have tried to follow the package documentation on how to use locq2
.
The difference is that I am using my own dataset. Here is my code:
...ANSWER
Answered 2020-Jul-03 at 17:36The reason your data doesn't work is because it is not fully complete with data for all industries in all regions. Consider their example data:
QUESTION
My question has been answered before using zoo::
and data.table::
; I'm curious as to what the best solution with tidyverse/dplyr would be.
Previous answers (non-tidyverse): Forward and backward fill data frame in R Replacing NAs with latest non-NA value
My data looks like this, where the earliest two years (2015, 2016) in each country (usa, aus) have missing data (code for data input at the bottom):
...ANSWER
Answered 2020-Mar-05 at 07:54We can replace
the NA
s before 2017 with value available in 2017 year for each country
.
QUESTION
I have a table which I have trying to pivot it using spread gather from tidyr. Here is the following data set
...ANSWER
Answered 2020-Jan-10 at 19:08We could have a sequence by group to avoid the duplicate
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