dataRetrieval | R package is designed to obtain USGS | Data Visualization library
kandi X-RAY | dataRetrieval Summary
kandi X-RAY | dataRetrieval Summary
Retrieval functions for USGS and EPA hydrologic and water quality data.
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QUESTION
I am trying to run a function to download data from the USGS website using dataRetrieval
package of R and a function I have created called getstreamflow
. The code is the following:
ANSWER
Answered 2021-May-17 at 20:34Based on the image showed in the new data, each element in the list
is nested as a list. We can extract the list
element (of length 1) with [[1]]
and then apply the Filter
QUESTION
I am trying to download data from the USGS website using the dataRetrieval
package of R.
For that purpose, I have generated a function called getstreamflow
in R that works fine when I ran for example.
ANSWER
Answered 2021-May-17 at 14:37Answer
You wrote the tryCatch
outside of getstreamflow
. Hence, if one site fails, then getstreamflow
will return an error and nothing else. You should either supply 1 site at a time, or put the tryCatch
inside getstreamflow
.
Example
QUESTION
I am trying to pull out all United States Geological Survey (USGS) sites that have daily mean water temperature for a given date range using the USGS package dataRetrieval
. I can do this with a for loop that iterates through each US state/territory abbreviation but the loop stops running once it comes across a location that does not have any sites. How can I make the loop skip locations that do no have sites available?
This is the for loop that works but stops when it comes across a state/territory that does not have a site.
...ANSWER
Answered 2021-Feb-20 at 00:16Don't grow objects in for
loop. Define a list and fill it in each iteration. Try :
QUESTION
I'm trying to change the formatting of multiple data frames that are in a list. I was previously using pipes when formatting single data frames, but I don't know if this is still the most efficient way for reiterating the process. Using pipes I don't know how to get the script to call the columns names in the data frames and not the names of the data frames in the list. I've included all of the script that I have so far and the script I'm trying to make work.
My current script:
...ANSWER
Answered 2020-Dec-17 at 21:33I can't get the last pivot_wider()
to work, but you could actually stick the pipe in an lapply()
statement, like below. I also used df$
to access siteNumber
and siteName
:
QUESTION
I'm fairly new to R and have been struggling with simplifying some code using a for loop. I am attempting to pull water quality data from an online database using the package dataRetrieval. I currently have duplicated the code for each site and changed the site number and output name, but have been trying to simplify this by putting the script in a for loop and am having trouble with creating the separate data tables with unique identifiers.
Original Code that creates a data table for each site. The only variables that changes are the siteNumbers
and the data table name "x"_dataTable
ANSWER
Answered 2020-Dec-09 at 16:29You need to loop over the row index and reference the data frame with row number in the loop, and create a list
to accumulate the results:
QUESTION
I have a script called DataRetrieval.py
. This script connects to an internal database, retrieves data and writes that data to an Excel file. This script imports the following:
a) a utils.py
helper module that contains several functions
b) a DataRetrieval.cfg
configuration file (which contains all of the login information and SQL queries that the DataRetrieval.py
script needs)
The DataRetrieval.py
script takes the following 3 command line arguments:
ANSWER
Answered 2020-Mar-16 at 01:38EDIT: I solved this problem by creating a .py file named retrieve.py
and passing that file to the source_python()
Reticulate function. The retrieve.py
file reads as follows:
QUESTION
I´m creating a small Node.js application for some monitoring stuff. The following operation has to be made with this app:
A job scheduler (using node-schedule module) is retrieving data from a web service within a time period and inserting the content into an array (for further processing). After finishing the job a promise should resolve the complete array in order to use it in my main program.
Here is my coding so far. With this coding the promise gets resolved before finishing the job and the array is empty. Can you give me any hints how to solve this?
...ANSWER
Answered 2020-Feb-19 at 19:42The problem is that you are resolving it outside the callback completion. You need to resolve it inside the callback.
Something like this
QUESTION
I ran into an issue where mutate()
in dplyr returns results in the wrong order. My call to mutate
uses data from an existing column as input, but the results are returned arranged as if the data was sorted before the mutate
.
My specific issue uses the dataRetrieval
package to get USGS/NWIS data from the web. In this example, I am retrieving the site names based on the site ID. In the `dataRetreival package, site ID is a numerical code stored as a character.
ANSWER
Answered 2020-Jan-02 at 17:45To understand what is happening, instead of extracting only the 'station_nm', get the 'site_no' as well
QUESTION
I would like to search a large list by name in the ui and use the value in the server function. Both the names and values are character vectors. I can't get it to pass the correct input (site_no as a character) to the server function. Here is an example:
...ANSWER
Answered 2019-Dec-06 at 22:43From ?readNWISuv
startDate
character starting date for data retrieval in the form YYYY-MM-DD ...
and the same for endDate
, but you passed these dates in terms of YYYY-DD-MM. The following should work
QUESTION
This is my first shiny app. I would like for the user to be able to update the number of facet columns and the dimensions of downloaded plot. readNWISuv
, the function to download data can take a long time if multiple years are queried. Currently, the app downloads the data each time the user wants to change the plot format or plot dimensions. Not sure if I need to use reactiveValues
, but I would assume that I want the data to be downloaded and manipulated outside of renderPlot
. Thanks!
ANSWER
Answered 2019-Dec-03 at 20:44There are a few changes to make to your sever section to make this work. Primarily:
- splitting the creation of the dataframe into a new
eventReactive
function, dependent on anactionButton
. - referring to the function inside the
renderPlotly
call
Try this:
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