NetPathMiner | R package for network path mining | Data Visualization library

by ahmohamed R Version: v1.0.3 License: No License

X-Ray Key Features Code Snippets(3)Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | NetPathMiner Summary

NetPathMiner is a R library typically used in Analytics, Data Visualization applications. NetPathMiner has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

NetPathMiner implements a flexible module-based process flow for network path mining and visualization, which can be fully integrated with user-customized functions. It supports construction of various types of genome scale networks from three different pathway file formats, enabling its utility to most common pathway databases. In addition, NetPathMiner provides different visualization techniques to facilitate the analysis of even thousands of output paths. To report bugs and arising issues, please visit

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Quality

Security

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Support

NetPathMiner has a low active ecosystem.

It has 6 star(s) with 5 fork(s). There are 2 watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 8 have been closed. On average issues are closed in 1123 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of NetPathMiner is v1.0.3

Quality

NetPathMiner has no bugs reported.

Security

NetPathMiner has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

NetPathMiner does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

NetPathMiner releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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NetPathMiner Key Features

No Key Features are available at this moment for NetPathMiner.

NetPathMiner Examples and Code Snippets

NetPathMiner,Installation Instructions,R Package dependencies

Lines of Code : 9

License : No License

Copy

    install.packages("igraph")

    install.packages("devtools")

    locate libcurl   
    locate curl-config

    sudo apt-get install libcurl4-openssl-dev

    install.packages("RCurl")

    if (!requireNamespace("BiocManager", quietly=TRUE))

NetPathMiner,Installation Instructions,NetPathMiner Installation

Lines of Code : 5

License : No License

Copy

    if (!requireNamespace("BiocManager", quietly=TRUE))
        install.packages("BiocManager")
    BiocManager::install("NetPathMiner")  

    library(devtools)   
    install_github(repo="NetPathMiner", username="ahmohamed")

NetPathMiner,Installation Instructions,Using Docker

Lines of Code : 5

License : No License

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docker pull ahmohamed/netpathminer
docker run -e PASSWORD=bioc -p 8787:8787 ahmohamed/netpathminer:latest

docker run -e PASSWORD=bioc -p 8787:8787 \
  -v "path/to/data_folder":"/home/rstudio/data_folder" \
  ahmohamed/netpathminer:latest

Community Discussions

Trending Discussions on NetPathMiner

Exporting weighted igraph object for Cytoscape use with NetPathMiner

QUESTION

Exporting weighted igraph object for Cytoscape use with NetPathMiner

Asked 2018-Jul-12 at 23:15

I'm trying to export an igraph object for Cytoscape use with NetPathMiner package and while trying to load it in Cytoscape, I'm getting

Bad value associated with key weight

The code I'm using:

...

ANSWER

Answered 2018-Jul-12 at 23:15

Well, this is appears to be an issue for the NetPathMiner R package rather than for Cytoscape. Here is the issue tracker for that project:

https://github.com/ahmohamed/NetPathMiner/issues

In the meantime, I can suggest an alternative approach that might work. The RCy3 package supports sending igraph objects directly to Cytoscape, rather than exporting as GML and then having to manually import them. Here is that package:

https://bioconductor.org/packages/release/bioc/html/RCy3.html

And here is a short vignette on working with igraph:

https://bioconductor.org/packages/release/bioc/vignettes/RCy3/inst/doc/Cytoscape-and-iGraph.html

Source https://stackoverflow.com/questions/51193738

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install NetPathMiner

If everything went well you will be able to install the NetPathMiner package.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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