mice | Multivariate Imputation by Chained Equations

 by   amices R Version: v3.15.0 License: GPL-2.0

kandi X-RAY | mice Summary

kandi X-RAY | mice Summary

mice is a R library typically used in Data Science applications. mice has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

The mice package implements a method to deal with missing data. The package creates multiple imputations (replacement values) for multivariate missing data. The method is based on Fully Conditional Specification, where each incomplete variable is imputed by a separate model. The MICE algorithm can impute mixes of continuous, binary, unordered categorical and ordered categorical data. In addition, MICE can impute continuous two-level data, and maintain consistency between imputations by means of passive imputation. Many diagnostic plots are implemented to inspect the quality of the imputations.
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              mice has a low active ecosystem.
              It has 343 star(s) with 91 fork(s). There are 18 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 17 open issues and 320 have been closed. On average issues are closed in 307 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of mice is v3.15.0

            kandi-Quality Quality

              mice has 0 bugs and 0 code smells.

            kandi-Security Security

              mice has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              mice code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              mice is licensed under the GPL-2.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              mice releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.
              It has 36829 lines of code, 0 functions and 194 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            mice Key Features

            No Key Features are available at this moment for mice.

            mice Examples and Code Snippets

            No Code Snippets are available at this moment for mice.

            Community Discussions

            QUESTION

            Trying to install package brms in R
            Asked 2022-Apr-16 at 19:16

            I'm trying to install the package brms in R so that I can rename the parameters returned from the function stan (from the rstan package). When I try install.package("brms", dependencies=TRUE), I get the (partial) output pasted at the end of this post (it's too long to paste the whole thing). At the end of the output, you can see that I get a series of "dependency errors", which makes sense because the very first error is not a dependency error, but rather a compilation error that says:

            ...

            ANSWER

            Answered 2022-Apr-16 at 17:24

            QUESTION

            Fill Columns with TRUE or FALSE based on other Dataframe
            Asked 2022-Apr-07 at 07:44

            Unfortunately I have a problem and would have to ask for your support.

            I have a list of the most popular pet names. From the dataframe x, it appears that "Jerry" is the most popular mouse name, "Garfield" is the second most popular cat name, and so on.

            ...

            ANSWER

            Answered 2022-Apr-07 at 07:36

            One option is to serially left_join() x onto y and then convert the NA into logical at the end.

            Source https://stackoverflow.com/questions/71777628

            QUESTION

            Extract the first N observations of groups according to another dataframe
            Asked 2022-Apr-02 at 17:28

            I would like to extract the first observations of different groups from a dataframe. The number of observations comes from another dataframe.

            Here is an example: In dataframe "x" there are different groups of animals with their names.

            ...

            ANSWER

            Answered 2022-Apr-02 at 17:28

            Create logical condition with row_number() on the 'first_Obs' after joining the two datasets

            Source https://stackoverflow.com/questions/71719690

            QUESTION

            How to classify data from object according to criteria given in another object, when the two objects have same keys?
            Asked 2022-Mar-28 at 19:56

            I have two objects that I need to combine somehow to achieve a desired output. Here's a toy example.

            Let's say that I'm running an experiment about a new mice diet. I gathered 6 mice and fed each of them with a different diet. After several weeks, I weighted all mice and recorded each one's weight. Those weights are given in the following object:

            ...

            ANSWER

            Answered 2022-Mar-28 at 11:25

            Loop them one by one and push them in the right array.

            Source https://stackoverflow.com/questions/71646552

            QUESTION

            frequency of words in text not present in another text with tf.Tokenizer
            Asked 2022-Feb-22 at 17:04

            I have a text A and a text B. I wish to find the percentage of words in text B (counting all occurrences) not present in the vocabulary (i.e., the list of all unique words) of text A.

            E.g.,

            A = "a cat and a cat and a mouse"

            B = "a plump cat and some more cat and some more mice too"

            B has 12 words. Plump, some, more, mice and too are not in A. Plumb is not in A and occurs once, some twice, more twice, mice once, too once. 7 out of 12 words in B are not in A. --> 58 % of B is not in A.

            I think we can use Tensorflow's Tokenizer. We can probably also use something else, plain python or another tokenizer and other solutions are welcome.

            With tf.Tokenizer I get the word_index for the text A

            ...

            ANSWER

            Answered 2022-Feb-22 at 16:19

            Maybe try something like this:

            Source https://stackoverflow.com/questions/71224197

            QUESTION

            tab_corr, tab_df, and psych::describe on a mice mids object
            Asked 2022-Feb-12 at 00:27

            I have imputed data saved as a mids object and am trying to adapt my usual workflow around imputed data. However, I cannot figure out how to use sjPlot's tab_corr() and tab_df() and psych's describe on a mids object.

            My goal is to generate a table of descriptive statistics and a correlation matrix without averaging the imputed datasets together. I was able to generate correlations using miceadds::micombine.cor, but the output isn't formatted like a typical correlation matrix. I also can individually compute means, SDs, etc. of variables from the mids object, but I'm looking for something that will generate a table.

            ...

            ANSWER

            Answered 2022-Feb-12 at 00:27

            The previous code was incorrect. I have created two functions, mice_df and mice_cor (link to Github repo here) that will generate a correlation matrix and a table of descriptive statistics from a mids object using Rubin's Rules.

            gtsummary will neatly format models based on mids objects.

            Source https://stackoverflow.com/questions/70321021

            QUESTION

            How to subtract two array values (from different keys) using a ramda pipe?
            Asked 2022-Feb-02 at 21:23

            In a ramda pipe, I want to subtract the values of two array keys, to ultimately end up with an array of those differences.

            For example, consider the following mice_weights array. I want to get an array with the differences weight_post minus weight_pre, for the male mice only.

            ...

            ANSWER

            Answered 2022-Feb-02 at 20:20

            Sorry, I don't know about ramda pipes, but this is a trivial matter for array filtering and mapping.

            Source https://stackoverflow.com/questions/70962003

            QUESTION

            gtsummary and add_glance: Error: No glance method for objects of class mira
            Asked 2022-Jan-29 at 20:10

            I am trying to add r-squared and the number of observations to my regression tables using gtsummary and multiply imputed data from mice. I can still extract r-squared using glance if I pool the model, but mipo objects are not compatible with tbl_regression since pooling is already part of the tidying process. Any help with this issue is appreciated.

            ...

            ANSWER

            Answered 2022-Jan-29 at 20:10

            Thank you for the detailed question and reproducible example.

            You diagnosed the issue well. tbl_regression() expects unpooled results and broom::glance() expects the pools results. You can get what you need by passing a custom glance() function.

            Example below!

            Source https://stackoverflow.com/questions/70909155

            QUESTION

            Narrowing a Generic type, compiler is unhappy
            Asked 2022-Jan-28 at 17:14

            Given this somewhat tortured set-up:

            ...

            ANSWER

            Answered 2022-Jan-28 at 17:09

            QUESTION

            Non-standard evaluation in dplyr when using dots for variable number of arguments
            Asked 2022-Jan-18 at 02:41

            I am trying to write a function that can be used within a dplyr pipeline. It should take an arbitrary number of columns as arguments, and replace certain substrings in only those columns. Below is a simple example of what I have so far.

            ...

            ANSWER

            Answered 2022-Jan-18 at 02:12

            If you are using the latest tidyverse, the recommended approach nowadays is to use the {{ }} operator to immediately defuse the argument to .cols in across. Something like this

            Source https://stackoverflow.com/questions/70749533

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install mice

            The mice package can be installed from CRAN as follows:.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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