monocle-release

 by   cole-trapnell-lab R Version: Current License: No License

kandi X-RAY | monocle-release Summary

kandi X-RAY | monocle-release Summary

monocle-release is a R library. monocle-release has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

monocle-release
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            kandi-support Support

              monocle-release has a low active ecosystem.
              It has 253 star(s) with 105 fork(s). There are 42 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 286 open issues and 193 have been closed. On average issues are closed in 162 days. There are 8 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of monocle-release is current.

            kandi-Quality Quality

              monocle-release has no bugs reported.

            kandi-Security Security

              monocle-release has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              monocle-release does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              monocle-release releases are not available. You will need to build from source code and install.

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            monocle-release Key Features

            No Key Features are available at this moment for monocle-release.

            monocle-release Examples and Code Snippets

            No Code Snippets are available at this moment for monocle-release.

            Community Discussions

            Trending Discussions on monocle-release

            QUESTION

            Y Coordinates of Best Fit Curve in Ggplot2
            Asked 2020-Feb-12 at 16:47

            I have managed to generate pseudotime vs gene expression plots in Monocle for individual markers using the following code:

            ...

            ANSWER

            Answered 2020-Feb-12 at 16:47

            You can access the Pseudotime and "expectation" values that comprise the curve in plot$data (monocle just plots Pseudotime against spline-smoothed mean expression for the specified genes).

            You can then use approxfun to do 2d interpolation and evaluate a grid of points along the range of pseudotime.

            NOTE: I am not sure this is a sensible thing to do. Pseudotime is a fairly loose and wooly thing, and reading deeply into minute changes in pseudotime is likely to lead to pretty shaky conclusions.

            In any case, if you're interested in using this type of approach I would just read the code on github as it should be fairly easy to reproduce the output.

            Source https://stackoverflow.com/questions/60192188

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install monocle-release

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/cole-trapnell-lab/monocle-release.git

          • CLI

            gh repo clone cole-trapnell-lab/monocle-release

          • sshUrl

            git@github.com:cole-trapnell-lab/monocle-release.git

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