ggsignif | Easily add significance brackets to your ggplots | Data Visualization library

 by   const-ae R Version: 0.6.4 License: GPL-3.0

kandi X-RAY | ggsignif Summary

kandi X-RAY | ggsignif Summary

ggsignif is a R library typically used in Analytics, Data Visualization applications. ggsignif has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

This package provides an easy way to indicate if two groups are significantly different. Commonly this is shown by a bar on top connecting the groups of interest which itself is annotated with the level of significance (NS, *, **, ***). The package provides a single layer (geom_signif) that takes the groups for comparison and the test (t.test, wilcox etc.) and adds the annotation to the plot.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              ggsignif has a low active ecosystem.
              It has 511 star(s) with 39 fork(s). There are 14 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 22 open issues and 73 have been closed. On average issues are closed in 482 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of ggsignif is 0.6.4

            kandi-Quality Quality

              ggsignif has 0 bugs and 0 code smells.

            kandi-Security Security

              ggsignif has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              ggsignif code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              ggsignif is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              ggsignif releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.
              It has 245 lines of code, 0 functions and 2 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of ggsignif
            Get all kandi verified functions for this library.

            ggsignif Key Features

            No Key Features are available at this moment for ggsignif.

            ggsignif Examples and Code Snippets

            No Code Snippets are available at this moment for ggsignif.

            Community Discussions

            QUESTION

            Wrong results in calculating boxplot significance levels in R
            Asked 2022-Apr-15 at 01:11

            I am working on creating a basic boxplot with significance level bars (as showed here: How to draw the boxplot with significant level?)

            The data I use is as follows:

            title1 title2 value 1 A 8.88 2 A 5.84 3 A 13.28 4 A 16.89 1 B 21.39 2 B 20.77 3 B 28.03 4 B 19.78 1 C 28.89 2 C 35.41 3 C 37.47 4 C 50.11 1 D 50.84 2 D 53.21 3 D 46.47 4 D 45.03

            With the following code, creating the boxplot works fine. For the significance bars, I want to use paired t tests like title2=A vs. title2=B, with the two rows with title1=1 being a pair and so on.

            In R, I entered the following command, but it yields different results for p. For instance, the p-value for A vs. D should be 0.003, but R yields 2.8e-05. What is the correct syntax for a paired t test?

            ...

            ANSWER

            Answered 2022-Apr-15 at 01:11

            ggsignif is computing the unpaired t-test, and I think you want the paired test. Luckily geom_signif has a test.args argument, which will allow you to pass paired = TRUE to the geom:

            Source https://stackoverflow.com/questions/71878639

            QUESTION

            Error when trying to map aesthetics with geom_signi
            Asked 2021-Nov-30 at 14:05

            I am trying to create a faceted boxplot with significance levels indicated as asterisks like '***'. The problem is, I am getting an error when trying to add the geom_signif layer.

            Warning message: Ignoring unknown aesthetics: xmin, xmax, annotations, y_position, map_signif_level

            This is my data

            ...

            ANSWER

            Answered 2021-Nov-30 at 12:14

            I see several things.

            1. Your p.adj is 1 all the time. So I can't create a label with *

            2. Although you are receiving some warnings I am not receiving any error and the code is doing what I expected.

            3. You can resize the ylim and define the height of the labels.

            library(tidyverse) library(ggsignif) library(ggpubr)

            Source https://stackoverflow.com/questions/70168302

            QUESTION

            R ggplot2 show significance between subgroups
            Asked 2021-Nov-26 at 17:15

            I am trying to show the significance levels within a group consisting of two factors, but I seem to always get the significance levels between groups which is not what I want.

            ...

            ANSWER

            Answered 2021-Nov-26 at 17:15

            Facets don't seem to work with {ggsignif}, but you could fake them, by looping over your dates, and then patching the plots together.

            Below one way

            Source https://stackoverflow.com/questions/70124128

            QUESTION

            Geom_signif with 3 group comparison
            Asked 2021-Oct-01 at 05:31

            I want to add a second comparison on top of my group comparisons using the geom_signif function. I have 3 subgroups and I am comparing the various subgroups for (C4). I want my final figure to look like this (attached).

            ...

            ANSWER

            Answered 2021-Oct-01 at 05:31

            Just add additional values to arguments in geom_signif

            Source https://stackoverflow.com/questions/69400216

            QUESTION

            geom_signif between boxplots of different x and same group
            Asked 2021-Sep-27 at 11:23

            How could I test differences between boxplots x='a' and x='b', both being group='g1', and then between boxplots x='a' and x='b' both being group='g2'?

            ...

            ANSWER

            Answered 2021-Sep-27 at 11:23

            One way would be to use an interaction between the x and group variables:

            Source https://stackoverflow.com/questions/69308304

            QUESTION

            Use ggsignif to put significance bars over facets
            Asked 2021-Sep-16 at 00:15

            I'm trying to do almost exactly this. I have this graph:

            From this data frame:

            ...

            ANSWER

            Answered 2021-Sep-15 at 19:40

            The issue is that geom_signif inherits the global aesthetics you set inside ggplot(). In particular, as you set fill=Follow ggplot is expecting a variable with this name in the dataframe you passed via the data argument of geom_signif.

            One option to solve this issue would be to make fill=Follow a local aesthetic to geom_col which also requires to map Follow on the group aes inside geom_text.

            Source https://stackoverflow.com/questions/69198346

            QUESTION

            How to define data when using ggsignif with grouped bar graphs and facet_wrap in R
            Asked 2021-Sep-08 at 14:03

            EDITED

            I was using the ggsignif package in a totally WRONG way: I didn't want to calculate significance values from the barplot but I just wanted to draw on the barplot the ones I already had from a separate analysis. To do this, this video helped me A LOT https://www.youtube.com/watch?v=30mqU2vcx68

            OLD QUESTION

            Hello, I'd like to ask a question about the ggsignif package in the R software. I want to display significant stars in top of paired bar graphs using facet_wrap and I'm following this thread Using ggsignif with grouped bar graphs and facet_wrap not working but I cannot apply the same code to my graph. As in the image I attach, I'd like to make comparisons between bars as I drew, but I don't know how to define the data I'm comparing.

            I used this code to build my graph:

            ...

            ANSWER

            Answered 2021-Sep-08 at 08:14

            Significance refers to a distribution requiring many values per group. But for each group (e.g. S1-green-A) there is only one value in your dataset. Thus you draw a barplot and not a boxplot. You can group more values together e.g. by ignoring the color:

            Source https://stackoverflow.com/questions/69055581

            QUESTION

            adding significance brackets to ridgeline plot
            Asked 2021-Aug-06 at 14:47

            I am creating a ridge plot to compare a few groups (using ggridges package) and would like to add significance brackets to show comparisons between some group levels (using ggsignif package).

            But this doesn't seem to work because the computation fails in stat_ggsignif.

            Here is a reproducible example:

            ...

            ANSWER

            Answered 2021-Aug-02 at 13:11

            I did not manage to combine A) geom_density_ridges and B) geom_signif. The reason is that (A) requires numerical variable as x and categories as y, while (B) requires numerical variable as y and categories as x. And I have not managed to overwrite this behaviour. But I assume that you have chosen ridge_plots over simple boxplots as you are interested in a more informative visualization of the distribution. To do so, there is a much better solution than ridge_plots, the so called violin plots. See below a standard boxplot (with labelled significance):

            Source https://stackoverflow.com/questions/68576284

            QUESTION

            Adding p-values to ggplot; ggsignif says it can only handle data with groups that are plotted on the x-axis
            Asked 2021-Jul-20 at 07:09

            I have data as follows, to which I am trying to add p-values:

            ...

            ANSWER

            Answered 2021-Jul-20 at 07:09
            Edit

            Thanks for clarifying your expected outcome. Here is one way to include geom_signif() annotations without altering the original plot:

            Source https://stackoverflow.com/questions/68431222

            QUESTION

            Moving the last pair of columns further away from the others in ggplot2
            Asked 2021-Jul-16 at 09:11

            I have data as follows:

            ...

            ANSWER

            Answered 2021-Jul-16 at 08:53

            If you really want to do that (which I would advise against), you can make your x-variable a factor and set the levels to include a blank observation; add a blank observation with that level; and plot.

            For example:

            Source https://stackoverflow.com/questions/68405889

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ggsignif

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/const-ae/ggsignif.git

          • CLI

            gh repo clone const-ae/ggsignif

          • sshUrl

            git@github.com:const-ae/ggsignif.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link