effectsize | effect size and standardized parameters | Data Visualization library

 by   easystats R Version: v0.8.3 License: GPL-3.0

kandi X-RAY | effectsize Summary

kandi X-RAY | effectsize Summary

effectsize is a R library typically used in Analytics, Data Visualization applications. effectsize has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

The goal of this package is to provide utilities to work with indices of effect size and standardized parameters, allowing computation and conversion of indices such as Cohen’s d, r, odds-ratios, etc.
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              effectsize has a low active ecosystem.
              It has 304 star(s) with 20 fork(s). There are 12 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 20 open issues and 221 have been closed. On average issues are closed in 31 days. There are 4 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of effectsize is v0.8.3

            kandi-Quality Quality

              effectsize has 0 bugs and 0 code smells.

            kandi-Security Security

              effectsize has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              effectsize code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              effectsize is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              effectsize releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            effectsize Key Features

            No Key Features are available at this moment for effectsize.

            effectsize Examples and Code Snippets

            No Code Snippets are available at this moment for effectsize.

            Community Discussions

            QUESTION

            How to change genomewideline_value of volcano plot with Range Slider
            Asked 2022-Mar-22 at 03:35

            I'm trying to make a volcano plot and I want to change genomewideline_value based on Range Slider value but it not worked. Below is my sample code:

            ...

            ANSWER

            Answered 2022-Mar-22 at 03:35

            I don't use occasional or Dash, but I think what I noticed when I ran your code is that genomewideline_value only accepts a single value instead of taking a range value. if I change it from a range slider to a drop down, the change is as intended. I have tested this in the Colab environment with the jupyter_dash module in place, so please modify it for your environment.

            Source https://stackoverflow.com/questions/71555081

            QUESTION

            Dash: How to select data points either in the table which updates the plot and on the graph which updates the selection on the table?
            Asked 2022-Jan-13 at 09:35

            I am new on dash and plotly solutions. I am wondering if it is possible to join both approaches in the same application. Selecting the points, update the checkbox and then unselect some checkbox updating the row color. I have this code that i found here: https://community.plotly.com/t/dash-how-to-select-data-points-either-in-the-table-which-updates-the-plot-or-on-the-graph-which-updates-the-selection-on-the-table/46674, but I don't know how to do. Thanks.

            ...

            ANSWER

            Answered 2022-Jan-12 at 08:44

            You should combine the two callbacks into one, using dash.callback_context to flow-control as explained in the documentation here.

            As possible solution:

            Source https://stackoverflow.com/questions/70673783

            QUESTION

            ggplot annotate with italics and variables not working in R
            Asked 2021-Oct-08 at 18:51

            I have the following dataset (of which this is a subset):

            ...

            ANSWER

            Answered 2021-Oct-08 at 18:51

            Your code is erroring on eta_plot and cohenD_plot for me but try this.

            Source https://stackoverflow.com/questions/69500106

            QUESTION

            How to graph multiple columns from matrix using plot function
            Asked 2021-Sep-26 at 01:18

            I am trying to graph my matrix columns using plot but it looks like I made a mistake somewhere. I found the example code online so I'm not entirely sure how to troubleshoot it.

            ...

            ANSWER

            Answered 2021-Sep-26 at 01:17

            Maybe you are looking for this -

            Source https://stackoverflow.com/questions/69330865

            QUESTION

            Why am I getting an error about stats::model.frame() when passing an "lm" model to effectsize::effectsize()?
            Asked 2021-Aug-18 at 12:09

            I'm facing a strange situation when building a function that wraps lm(). Specifically, I get an error that pertains to stats::model.frame() when passing the function's model output to effectsize::effectsize().

            In the following example there are two scenarios, A and B. In A, I define a function that first builds a formula object my_formula <- as.formula(paste0(y, "~", x)) and then passes it to lm(). This function returns an object of class "lm". When I pass that object to effectsize::effectsize(), I get an error:

            Error in stats::model.frame(formula = my_formula, data = data_std, drop.unused.levels = TRUE) : object 'my_formula' not found

            Strangely, when I pass the same object to stats::model.frame(), it works.

            In scenario B, I build a function in which the formula is specified within lm(), rather than a preemptive object. In that scenario, passing the output to effectsize() works.

            Reproducible Example ...

            ANSWER

            Answered 2021-Aug-15 at 15:01

            When you pass an lm object to effectsize(), it re-evaluates the call in your current R environment, and not in the environment where your formula variable was created, hence it throws an error since it cannot find my_formula

            For stats::model.frame, since you are passing already the lm object, it just pulls out the model matrix, no need to evaluate, you can try passing it the formula:

            Source https://stackoverflow.com/questions/68792225

            QUESTION

            Multiple condition between two pandas dataframe
            Asked 2021-May-19 at 18:05

            I am working on a variant calling Format(.vcf) file. I am separating genotype Allele from individual genome data and calculating the chance of having the specific disease. Based on my analysis I need to implement a condition like : I have two different panda data frame which are extracted from .vcf file

            1. Diseases
            SNP EfectSize MinorAlleFrequency rs05 0.32 0.09 rs012 0.5 0.20 rs02 0.8 0.29

            2.IndividualSNPs

            SNP cola colb rs02 0 1 rs03 1 1 rs12 0 0

            my condition will be like: if number 1.dataframe (Diseases) column 'SNP' is match with number 2. dataframe (individualSNPs) column 'SNP'. then I will check from individualSNPs dataframe cola and colb column.

            ...

            ANSWER

            Answered 2021-May-19 at 18:05

            First you could start by merging your dataframes so that you get a new dataframe with columns from both dataframes, and only keep rows from the Diseases dataframe (column SNP) that exist in the IndividualSNPs dataframe (column SNP). It would be like :

            Source https://stackoverflow.com/questions/67482929

            QUESTION

            how to run 2 way mixed anova with type 3 error using for loop in R?
            Asked 2021-May-14 at 04:51

            My statistical analysis design is multiple 2-way mixed ANOVAs. Independent variables are Team (i.e., between factor) and Box (i.e., within factor). Since the number of participants doesn't match with each other, I would like to use aov_car or car::Anova instead of aov or rstatix::anova_test to calculate omega squared. When I ran aov_car individually, it returned the result without error (a warning message appears though) as follows:

            ...

            ANSWER

            Answered 2021-May-14 at 04:51

            You can create the formula as string and convert it to formula using as.formula.

            Source https://stackoverflow.com/questions/67527455

            QUESTION

            Iterating Effect Size Calculations Through Columns
            Asked 2021-Apr-24 at 12:27

            I am currently comparing the size of 159 regions (ROI) in the brain between an at-risk and normal population on R. I originally calculated lm model p-values using this loop:

            ...

            ANSWER

            Answered 2021-Apr-17 at 21:45

            I would guess you used attach(ThalPC) before running your first script to add columns of ThalPC to the search path. Instead, try constructing your call to lm as:

            Source https://stackoverflow.com/questions/67138925

            QUESTION

            manually editing color of confidence intervals and mean across ggplot2 facets
            Asked 2021-Apr-15 at 16:51

            I can choose the color of my confidence intervals in ggplot, but it fails when I try to plot these intervals in different facets.

            This works as expected

            ...

            ANSWER

            Answered 2021-Apr-15 at 16:51

            Just change:

            colour=c("turquoise", "orange")

            to

            colour=c("turquoise", "orange", "turquoise", "orange")

            Source https://stackoverflow.com/questions/67109030

            QUESTION

            How to generate effect size [90%CI] in the summary table using R package “gtsummary”? New ES package calculation and qualitative indice in the table
            Asked 2020-Nov-29 at 22:00

            Once again I would like to thank Daniel Sjoberg and other collaborators for the constant implementation of functionality in the gtsummary package. For me, one of the most efficient suites in R for processing and reporting results in tables / in line.

            A while ago I asked for help on including effect size [90%CI] in the analytical tables generated by the gtsummary package. However, in this new post I intend to change the ES calculation package for giving me a vast repertoire of indexes and also for having their qualitative magnitude. I tried to implement this other package in new code. However, this message is returned:

            There was an error for variable 'age': Error in .deal_with_cohens_d_arguments (x, y, data): Please provide data argument.

            I believe I am not able to configure the function (CohenD object). Could someone please help me with my code?

            I copied it below:

            ...

            ANSWER

            Answered 2020-Nov-29 at 22:00

            The issue you're experiencing is in your user-defined function CohenD(): it did not like the way you were passing the formula. In the example below, I corrected the syntax. I also included the interpretation of the effect size by running add_stat() twice: once for the effect size, once for the interpretation.

            Source https://stackoverflow.com/questions/65059775

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

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