netview | Mutual nearest neighbor graphs and data visualization | Data Visualization library

by esteinig R Version: 1.1.0 License: No License

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kandi X-RAY | netview Summary

netview is a R library typically used in Analytics, Data Visualization applications. netview has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

NetView is a pipeline for the analysis of genetic structure using mutual k-nearest neighbour graphs (mkNNGs). The main implementation of the pipeline is now availabe in R. We decided to move away from Python to enable a more user-friendly access to the main command-line functions, interface integration with Shiny and visualization of the networks with networkD3. Please note that the method is primarily designed for the visualization of population structure and does not have the same rigorous statistical backbone as other model-based approaches, such as Admixture or Structure. It is therefore recommended to use the networks as a tool to understand and visualize genomic data across the genetic structure inferred from population genetic (and phylogenetic) analyses or supported by independent data (e.g. pedigrees). We are expanding the scope of this package to better accommodate this approach, including a novel workflows to detect key genetic contributors (Neuditschko et al. 2017), visualize admixture proportions and map samples in a geospatial framework powered by GlobeJS and Leaflet. For an introduction to the analysis and visualization of population structure with NetView, see the Pearl Oyster Tutorial. If you find any bugs or would like to contribute, feel free to contact us or use the issues function on GitHub. Please note that this repository is still under development and is not the published version of NetView P. However, core calculations in the pipeline are identical to the methods described in the publication for NetView P.

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netview has a low active ecosystem.

It has 12 star(s) with 0 fork(s). There are no watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 2 have been closed. On average issues are closed in 304 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of netview is 1.1.0

Quality

netview has 0 bugs and 0 code smells.

Security

netview has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

netview code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

netview does not have a standard license declared.

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Without a license, all rights are reserved, and you cannot use the library in your applications.

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netview releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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netview Key Features

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Community Discussions

Trending Discussions on netview

Run step when previous JCL step did not find file

Add-AzMetricAlertRuleV2 throw "Couldn't find a metric named..."

Suppress and handle stderr error output in PowerShell script

QUESTION

Run step when previous JCL step did not find file

Asked 2021-Jun-14 at 15:00

In the following JCL, the HFS path /u/woodsmn/jjk does not exist. It raises a JCL error and does not run the COPYHFS step, nor any other steps. I want it to detect the missing file, and run the FAILIND step.

I suspect MVS raises a JCL error and completely ignores any COND conditions that might apply. I was hoping it raise some failure step condition code and behave that way.

How can I re-write this to execute steps when a PATH does not exist?

...

ANSWER

Answered 2021-Jun-13 at 14:39

Use BPXBATCH to execute a shell command to test the existence of your directory.

Source https://stackoverflow.com/questions/67955145

QUESTION

Add-AzMetricAlertRuleV2 throw "Couldn't find a metric named..."

Asked 2021-May-25 at 01:40

Description

I'm trying to create new Azure Monitor Alert using PS script. I'm using MS documentation here: https://docs.microsoft.com/en-us/powershell/module/az.monitor/add-azmetricalertrulev2?view=azps-5.9.0

Steps to reproduce

$condition = New-AzMetricAlertRuleV2Criteria -MetricName "SqlDbDtuUsageMetric" -MetricNameSpace "Microsoft.Sql/servers/databases" -TimeAggregation Average -Operator GreaterThan -Threshold 5

$act = New-AzActionGroup -ActionGroupId /subscriptions/{subscription_id}/resourceGroups/{resource_group}/providers/microsoft.insights/actionGroups/SqlDbDtuUsageAction

Add-AzMetricAlertRuleV2 -Name "SqlDbDtuUsageAlertGt5" -ResourceGroupName {resource_group} -WindowSize 00:05:00 -Frequency 00:05:00 -TargetResourceId "/subscriptions/{subscription_id}/resourceGroups/{resource_group}/providers/Microsoft.Sql/servers/{sql_server}/databases/vi{sql_db}" -Description "Alerting when max used DTU is > 20" -Severity 3 -ActionGroup $act -Condition $condition

Error output

WARNING: 09:04:18 - *** The namespace for all the model classes will change from Microsoft.Azure.Management.Monitor.Management.Models to Microsoft.Azure.Management.Monitor.Models in future releases. WARNING: 09:04:18 - *** The namespace for output classes will be uniform for all classes in future releases to make it independent of modifications in the model classes. VERBOSE: Performing the operation "Create/update an alert rule" on target "Create/update an alert rule: SqlDbDtuUsageAlertGt5 from resource group: vi-prod-be-cin-rg". Add-AzMetricAlertRuleV2 : Exception type: ErrorResponseException, Message: Couldn't find a metric named metric1. Make sure the name is correct. Activity ID: 3e7e537e-43fc-40ad-8a84-745df33e1668., Code: BadRequest, Status code:BadRequest, Reason phrase: BadRequest At line:1 char:1

Add-AzMetricAlertRuleV2 -Name "SqlDbDtuUsageAlertGt5" -ResourceGroupN ...
...

ANSWER

Answered 2021-May-25 at 01:40

According to the error, the MetricNameSpace Microsoft.Sql/servers/databases does not contain metric SqlDbDtuUsageMetric. Regarding the supported metric, please use the following command to get

Source https://stackoverflow.com/questions/67667463

QUESTION

Suppress and handle stderr error output in PowerShell script

Asked 2020-Oct-04 at 15:54

I wanted to capture SMB shares using PowerShell, but this doesn't work

...

ANSWER

Answered 2020-Oct-04 at 15:54

Stderr (standard error) output from external programs is not integrated with PowerShell's error handling, primarily because this stream is not only used to communicate errors, but also status information.
(You should therefore only infer success vs. failure of an external-program call from its exit code, as reflected in $LASTEXTICODE^[1]).

However, you can redirect stderr output, and redirecting it to $null (2>$null) silences it^[2]:

Source https://stackoverflow.com/questions/64196373

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Install netview

You can download it from GitHub.

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