DHARMa | Diagnostics for HierArchical Regession Models

 by   florianhartig R Version: v0.4.6 License: No License

kandi X-RAY | DHARMa Summary

kandi X-RAY | DHARMa Summary

DHARMa is a R library typically used in Simulation applications. DHARMa has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

The 'DHARMa' package uses a simulation-based approach to create readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed models. Currently supported are linear and generalized linear (mixed) models from 'lme4' (classes 'lmerMod', 'glmerMod'), 'glmmTMB' 'GLMMadaptive' and 'spaMM', generalized additive models ('gam' from 'mgcv'), 'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and 'lm' model classes. Moreover, externally created simulations, e.g. posterior predictive simulations from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well. The resulting residuals are standardized to values between 0 and 1 and can be interpreted as intuitively as residuals from a linear regression. The package also provides a number of plot and test functions for typical model misspecification problems, such as over/underdispersion, zero-inflation, and residual spatial and temporal autocorrelation.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              DHARMa has a low active ecosystem.
              It has 167 star(s) with 20 fork(s). There are 13 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 96 open issues and 223 have been closed. On average issues are closed in 139 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of DHARMa is v0.4.6

            kandi-Quality Quality

              DHARMa has no bugs reported.

            kandi-Security Security

              DHARMa has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              DHARMa does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              DHARMa releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of DHARMa
            Get all kandi verified functions for this library.

            DHARMa Key Features

            No Key Features are available at this moment for DHARMa.

            DHARMa Examples and Code Snippets

            No Code Snippets are available at this moment for DHARMa.

            Community Discussions

            QUESTION

            Failing to produce glmmTMB diagnostics plots with package DHARMa
            Asked 2021-Apr-28 at 17:39

            I have tried to produce diagnostics plots for glmmTMB models using package DHARMa without success. Example 1.1 in this vignette gives:

            ...

            ANSWER

            Answered 2021-Apr-23 at 22:01

            It looks like this is a bug that was present in R <= 4.0.1. From the R NEWS file for version 4.0.2:

            on.exit() now correctly matches named arguments, thanks to PR#17815 (including patch) by Brodie Gaslam.

            I have attempted to fix the glmmTMB code so it works around the bug.

            You could try

            Source https://stackoverflow.com/questions/67229026

            QUESTION

            Gamma distribution in a GLMM
            Asked 2021-Mar-05 at 19:36

            I am trying to create a GLMM in R. I want to find out how the emergence time of bats depends on different factors. Here I take the time difference between the departure of the respective bat and the sunset of the day as dependent variable (metric). As fixed factors I would like to include different weather data (metric) as well as the reproductive state (categorical) of the bats. Additionally, there is the transponder number (individual identification code) as a random factor to exclude inter-individual differences between the bats.

            I first worked in R with a linear mixed model (package lme4), but the QQ plot of the residuals deviates very strongly from the normal distribution. Also a histogram of the data rather indicates a gamma distribution. As a result, I implemented a GLMM with a gamma distribution. Here is an example with one weather parameter:

            ...

            ANSWER

            Answered 2021-Mar-05 at 19:36

            But if the data also do not correspond to a gamma distribution, what alternative is there?

            Gaussian (or normal) distributions are typically used for data that are normally distributed around zero, which sounds like you do not have. But the lognormal distribution does not have the same requirements. Following your previous code, you would fit it like this:

            Source https://stackoverflow.com/questions/66474293

            QUESTION

            How to update the value into a nested array of objects if value for specific key is same?
            Asked 2021-Jan-13 at 18:39
            let data = [
            {"name":"Dhanush","createdAt":"2021/01/13 16:57:53","songs":[]},
            {"name":"Dharma","createdAt":"2021/01/13 17:02:47","songs":[]},
            {"name":"Sachin","createdAt":"2021/01/13 17:30:45","songs":[]}
            ]
            
            let name = "Dhanush"
            
            let song = {
              'id':1,
              'duration': '5 mins',
              'name': 'Bingo'
            }
            
            ...

            ANSWER

            Answered 2021-Jan-13 at 18:39

            You are not returning val when using map method.

            Source https://stackoverflow.com/questions/65707705

            QUESTION

            Firebase data retrieval in flutter returns a null string
            Asked 2020-Aug-02 at 18:45

            I have created 2 variables (nameUserDisplay & aboutUserDisplay), when data is retrieved using _getName() & _getAbout() method. A null string is returned.

            It is required in the project that the data in the document should be shown instead of any default data.

            Please help.

            Below is the full code

            ...

            ANSWER

            Answered 2020-Aug-02 at 18:31

            You need to call setState when you get name and about to force widgets to be rebuilt with the new state values.

            Also, It seems that you could do both things in the same method to avoid calling setState twice since it's not free.

            Source https://stackoverflow.com/questions/63219640

            QUESTION

            UnicodeEncodeError: 'charmap' codec can't encode character '\ufeff' in position 0: character maps to
            Asked 2019-Feb-14 at 08:11

            I'm working on an application which is using utf-8 encoding. For debugging purposes I need to print the text. If I use print() directly with variable containing my unicode string, ex- print(pred_str).

            I get this error:

            UnicodeEncodeError: 'charmap' codec can't encode character '\ufeff' in position 0: character maps to

            So I tried print(pred_str.encode('utf-8')) and my output looks like this:

            b'\xef\xbb\xbfpudgala-dharma-nair\xc4\x81tmyayo\xe1\xb8\xa5 apratipanna-vipratipann\xc4\x81n\xc4\x81m' b'avipar\xc4\xabta-pudgala-dharma-nair\xc4\x81tmya-pratip\xc4\x81dana-artham' b'tri\xe1\xb9\x83\xc5\x9bik\xc4\x81-vij\xc3\xb1apti-prakara\xe1\xb9\x87a-\xc4\x81rambha\xe1\xb8\xa5' b'pudgala-dharma-nair\xc4\x81tmya-pratip\xc4\x81danam punar kle\xc5\x9ba-j\xc3\xb1eya-\xc4\x81vara\xe1\xb9\x87a-prah\xc4\x81\xe1\xb9\x87a-artham'

            But, I want my output to look like this:

            pudgala-dharma-nairātmyayoḥ apratipanna-vipratipannānām aviparīta-pudgala-dharma-nairātmya-pratipādana-artham triṃśikā-vijñapti-prakaraṇa-ārambhaḥ pudgala-dharma-nairātmya-pratipādanam punar kleśa-jñeya-āvaraṇa-prahāṇa-artham

            If i save my string in file using:

            ...

            ANSWER

            Answered 2019-Feb-13 at 07:47

            QUESTION

            Top N earliest punched in Employees across departments in a month
            Asked 2018-Aug-01 at 14:43

            Find two of the earliest punched in Employees across departments in a month The dataset ,

            ...

            ANSWER

            Answered 2018-Aug-01 at 12:25

            QUESTION

            how to deserialize json object and add response to arraylist
            Asked 2018-Mar-13 at 17:48

            I am creating an app using soundcloud api but I am getting error while parsing json object, I am new in this things so don't know what I am doing wrong here

            Here is my interface

            ScService.java

            ...

            ANSWER

            Answered 2018-Mar-13 at 14:29

            The Gson object should be used in this way:

            Source https://stackoverflow.com/questions/49257608

            QUESTION

            Add, remove row from table using jquery
            Asked 2017-Feb-28 at 09:48

            According to my code I have 2 tables. On click of 'add' the whole row will append to the next table and on click of 'delete' it will append to the first table.

            The code which I wrote works fine but I have a weird error on adding all rows or deleting all rows multiple times, as it will stop working. I am not able to figure out the issue.

            ...

            ANSWER

            Answered 2017-Feb-28 at 09:48

            bind event to document and not to table row, as after removing element, bound event is also deleted.

            Source https://stackoverflow.com/questions/42504907

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install DHARMa

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/florianhartig/DHARMa.git

          • CLI

            gh repo clone florianhartig/DHARMa

          • sshUrl

            git@github.com:florianhartig/DHARMa.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link